genome.fa.s8041.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008041.1 Hibiscus syriacus cultivar Beakdansim tig00110528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4970990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  3  of  21  ( 2430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579689--579767	22	3.6	22	92	0	122	25	21	25	27	1.99
580686--580759	30	2.4	31	93	2	123	31	10	2	55	1.48
582994--583059	33	2.0	33	97	2	125	28	25	12	33	1.92
585208--585257	26	2.0	25	81	18	59	58	6	0	36	1.23
586037--586071	11	3.2	11	91	0	52	22	48	14	14	1.79
588156--588202	23	2.0	23	91	4	76	38	2	36	23	1.67
592727--592793	25	2.7	25	80	0	80	47	17	20	13	1.81
593905--594006	36	2.8	36	84	0	141	30	20	22	26	1.98
595860--595899	20	2.0	20	85	0	53	17	27	27	27	1.98
599681--599727	18	2.7	17	86	3	67	34	8	29	27	1.87
600298--600379	38	2.2	38	84	6	121	41	39	9	9	1.71
600898--600989	46	2.0	46	97	0	175	26	22	23	27	2.00
608336--608367	16	2.0	16	93	0	55	31	0	34	34	1.58
619002--619052	20	2.5	20	96	0	93	27	31	23	17	1.97
625269--625422	78	2.0	79	81	8	183	38	10	6	44	1.64
628235--628279	17	2.8	17	93	6	76	31	15	20	33	1.93
628241--628292	17	3.0	18	88	5	63	30	19	19	30	1.96
630641--630714	25	3.0	25	85	0	94	44	21	17	16	1.86
630644--630724	25	3.2	25	82	0	72	48	22	16	13	1.80
630717--630755	21	1.9	20	84	5	51	48	5	20	25	1.70
635391--635421	14	2.2	14	94	0	53	58	19	12	9	1.62
635408--635450	10	4.3	10	81	0	59	55	9	13	20	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635413--635450	20	1.9	20	94	0	67	55	7	13	23	1.64
636638--636673	14	2.6	14	95	0	63	33	0	22	44	1.53
636780--636836	19	3.0	19	89	5	71	49	22	15	12	1.78
636841--636967	33	3.8	33	94	0	218	13	23	18	44	1.85
636876--636967	19	5.4	19	68	24	87	14	21	18	45	1.84
636862--636949	14	5.6	14	67	23	50	12	23	19	44	1.85
636951--636994	20	2.3	19	84	4	52	22	22	18	36	1.95
636961--637033	20	3.6	20	67	17	51	24	17	23	34	1.96
639037--639429	194	2.0	192	94	4	693	24	21	13	39	1.90
639637--639690	24	2.2	24	93	0	90	40	20	18	20	1.91
640575--640710	20	6.7	20	79	5	94	32	17	22	27	1.96
640538--640689	80	1.9	80	85	8	211	30	19	19	30	1.96
640543--640668	20	6.3	20	78	9	98	30	18	18	33	1.95
641671--641734	23	2.5	24	82	14	76	39	0	0	60	0.97
641777--641809	17	1.9	17	100	0	66	48	0	3	48	1.17
641832--641904	28	2.6	28	81	16	105	47	2	1	47	1.24
649065--649190	62	2.0	62	100	0	252	34	27	7	30	1.85
664480--664824	46	7.5	46	80	2	352	44	13	20	21	1.86
664607--664736	26	5.5	26	65	20	86	40	13	24	21	1.89
664480--664834	92	3.9	91	87	3	462	44	14	20	21	1.86
664632--664711	20	3.7	20	68	18	52	40	15	25	20	1.90
664480--664824	138	2.5	138	80	3	399	44	13	20	21	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664804--664859	22	2.5	22	94	0	94	51	12	12	23	1.73
671585--671763	46	3.9	46	87	2	254	42	15	21	20	1.89
671618--671742	26	5.3	26	63	23	69	41	13	23	21	1.88
671644--671762	20	5.3	20	69	21	67	41	15	24	19	1.89
671584--671763	92	2.0	92	96	2	335	42	15	22	20	1.89
671731--671795	32	2.0	32	100	0	130	44	15	24	15	1.85
671685--671839	78	2.0	77	91	1	247	42	14	23	19	1.88
671762--672143	46	8.3	46	86	0	514	41	13	23	21	1.89
671763--672143	92	4.2	92	91	0	611	40	13	23	21	1.89
671770--672144	183	2.0	183	91	0	615	41	13	23	21	1.89
682531--682571	19	2.2	19	86	8	57	39	0	7	53	1.29
686626--686667	21	2.0	22	85	4	59	30	26	4	38	1.77
686887--686935	19	2.5	19	84	15	73	44	2	8	44	1.45
686973--687225	5	50.8	5	93	6	435	39	0	0	60	0.97
696407--696450	14	3.1	15	83	9	56	47	0	0	52	1.00
696407--696450	15	2.9	16	87	9	58	47	0	0	52	1.00
696469--696527	16	3.5	16	80	11	64	47	1	8	42	1.44
696469--696516	18	2.7	18	80	3	62	43	0	8	47	1.33
696570--696618	20	2.4	21	80	13	57	48	2	6	42	1.39
696659--696740	20	4.3	20	80	18	95	39	0	1	59	1.05
696658--696741	3	27.7	3	73	20	52	38	0	1	60	1.04
696658--696742	39	2.2	39	85	10	111	37	0	1	61	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698326--698408	42	2.0	43	85	2	114	27	12	7	53	1.64
698326--698408	43	2.0	42	83	7	105	27	12	7	53	1.64
698345--698556	43	4.9	42	74	13	153	23	17	8	50	1.74
698345--698515	91	1.9	90	82	3	218	23	16	9	50	1.73
702549--702942	132	3.0	132	77	5	400	31	19	15	32	1.93
702493--702942	135	3.4	133	78	4	406	32	19	15	32	1.93
703840--703884	19	2.4	19	80	0	54	71	2	24	2	1.09
711337--711370	2	17.0	2	100	0	68	50	0	0	50	1.00
713844--713891	20	2.3	21	79	13	55	14	6	0	79	0.92
720161--720206	20	2.3	19	85	14	58	26	15	8	50	1.73
738184--738232	14	3.5	14	80	8	55	18	4	0	77	0.92
738188--738230	22	2.0	22	86	9	61	16	4	0	79	0.90
748366--748408	18	2.4	18	100	0	86	25	6	20	46	1.76
749858--749890	12	2.6	13	90	9	59	45	6	9	39	1.61
755687--755719	12	2.6	13	90	9	59	45	6	9	39	1.61
767843--767878	17	2.1	18	94	5	65	22	2	5	69	1.22
767847--767885	17	2.2	18	86	4	53	28	2	5	64	1.28
768882--768913	11	2.9	11	90	0	55	50	0	31	18	1.48
774524--774891	196	1.9	196	84	4	492	36	8	16	38	1.79
789212--789334	59	2.1	59	89	3	185	39	11	16	32	1.84
799944--799985	17	2.7	15	80	16	50	28	0	11	59	1.33
817483--817635	76	2.0	76	100	0	306	38	23	15	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
817709--817747	20	2.0	20	94	0	69	53	15	7	23	1.67
817710--817754	20	2.2	20	88	0	63	51	20	8	20	1.73
822289--822336	24	2.0	24	84	11	64	39	14	12	33	1.84
826512--826604	21	4.5	21	78	4	100	39	18	24	17	1.91
826512--826604	41	2.3	41	100	0	186	39	18	24	17	1.91
828323--828367	18	2.5	18	81	0	63	28	44	13	13	1.81
828838--828904	20	3.4	20	77	2	64	38	22	22	16	1.92
828893--828943	14	3.4	14	75	19	57	50	21	15	11	1.76
828877--828943	32	2.1	33	97	2	127	47	20	17	13	1.81
828949--829006	14	3.9	14	77	16	62	10	17	22	50	1.76
828944--829022	32	2.4	33	91	2	124	11	17	21	49	1.78
829007--829060	20	2.8	19	86	5	72	18	24	22	35	1.96
830974--831048	14	4.7	16	80	18	61	44	20	22	13	1.86
830986--831048	17	3.8	18	82	16	82	44	19	22	14	1.86
831072--831121	20	2.6	19	93	3	82	18	24	26	32	1.97
832137--832194	23	2.5	23	80	2	62	27	17	18	36	1.94
834547--834638	19	5.4	19	66	24	78	43	19	20	16	1.88
834547--834673	33	3.8	33	86	4	184	42	19	22	14	1.88
834548--834680	66	2.0	66	94	0	230	41	19	22	16	1.90
834673--834714	19	2.2	20	79	12	52	19	21	21	38	1.94
834682--834748	19	3.8	19	73	18	72	13	25	19	41	1.88
834855--834891	14	2.6	14	91	0	65	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836254--836320	21	3.2	21	68	4	55	19	20	35	23	1.95
836254--836376	42	2.9	41	80	7	113	22	17	36	22	1.95
838361--838461	19	5.5	19	75	15	88	45	20	20	12	1.84
838422--838462	20	2.1	20	90	4	66	51	19	17	12	1.76
838422--838474	20	2.7	19	82	8	61	47	18	18	15	1.83
838470--838537	20	3.5	19	82	6	82	11	16	25	47	1.80
839098--839151	20	2.7	20	97	0	99	25	18	24	31	1.97
839058--839172	61	1.9	61	81	3	142	21	20	23	34	1.96
839270--839333	19	3.3	19	88	2	65	23	18	31	26	1.98
839283--839333	19	2.7	19	96	0	93	21	21	31	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21