genome.fa.s8041.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008041.1 Hibiscus syriacus cultivar Beakdansim tig00110528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4970990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  21  of  21  ( 2430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4896302--4896495	60	3.2	60	86	6	246	32	19	21	26	1.97
4896536--4896580	23	2.0	21	84	16	56	33	22	22	22	1.97
4897161--4897217	23	2.5	23	88	2	80	21	29	22	26	1.99
4897839--4897876	2	20.5	2	84	15	55	52	0	0	47	1.00
4898021--4898060	2	20.5	2	94	5	73	47	0	0	52	1.00
4897799--4898155	177	2.0	181	92	6	613	32	10	14	42	1.80
4900767--4901016	123	2.0	126	97	2	479	36	23	17	23	1.95
4916083--4916171	2	44.5	2	100	0	178	50	0	0	49	1.00
4917518--4917562	19	2.4	19	92	0	72	20	15	48	15	1.80
4922906--4923059	77	2.0	77	96	0	281	22	21	27	27	1.99
4923797--4923915	37	3.2	37	92	0	184	39	24	17	18	1.92
4924607--4924757	60	2.5	60	90	2	223	33	20	3	42	1.69
4928020--4928053	17	2.1	17	88	5	52	44	0	0	55	0.99
4928030--4928100	19	3.9	18	73	12	65	38	2	0	59	1.12
4931667--4931738	29	2.5	28	76	19	76	13	13	11	61	1.58
4933905--4934004	43	2.3	43	89	10	150	34	17	20	29	1.95
4938437--4938709	66	4.1	65	81	8	268	32	13	13	40	1.84
4938682--4938740	31	1.9	31	89	0	91	30	20	11	37	1.89
4938806--4939556	135	5.6	134	84	4	914	27	31	15	25	1.96
4939748--4939808	17	3.6	17	76	8	54	39	1	0	59	1.08
4939750--4939820	21	3.3	22	72	22	69	38	1	0	60	1.06
4941674--4941725	19	2.7	20	78	3	61	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4945651--4945717	23	2.9	24	80	6	84	34	25	14	25	1.94
4947259--4947332	24	3.1	24	84	3	87	27	21	20	31	1.98
4955575--4955626	19	2.7	20	78	3	61	36	0	0	63	0.95
4959006--4959074	23	3.0	24	80	6	88	34	26	14	24	1.94
4958972--4959074	47	2.2	46	81	8	111	33	25	17	24	1.96
4958972--4959074	23	4.4	23	71	8	84	33	25	17	24	1.96
4960617--4960670	24	2.2	24	83	0	63	27	22	16	33	1.95
4960634--4960690	24	2.4	24	87	0	87	28	19	22	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21

The End!