genome.fa.s8041.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008041.1 Hibiscus syriacus cultivar Beakdansim tig00110528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4970990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  9  of  21  ( 2430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1884125--1884172	3	16.7	3	83	16	66	66	0	0	33	0.92
1884125--1884172	19	2.6	18	90	9	78	66	0	0	33	0.92
1884636--1884729	40	2.3	41	85	5	120	32	23	18	25	1.97
1884895--1884999	41	2.6	40	81	3	138	29	23	22	23	1.99
1884617--1885109	250	2.0	245	86	5	699	33	18	16	32	1.92
1904113--1904235	31	4.0	31	82	4	158	35	17	19	26	1.94
1905980--1906016	16	2.3	16	95	0	65	32	2	21	43	1.67
1906177--1906312	68	2.0	68	95	1	247	36	16	5	42	1.70
1906734--1906783	18	2.8	17	82	11	55	14	10	18	58	1.63
1906956--1906993	17	2.2	18	85	4	51	26	0	2	71	1.00
1908982--1909031	22	2.3	22	93	3	84	54	10	4	32	1.52
1909750--1909806	25	2.2	25	78	3	60	28	1	33	36	1.68
1909723--1909845	51	2.4	51	81	0	138	29	2	31	36	1.71
1909929--1910003	26	3.0	25	70	25	68	52	9	13	25	1.70
1922179--1922225	23	2.0	23	84	8	60	44	12	8	34	1.73
1922987--1923039	23	2.3	23	100	0	106	35	22	26	15	1.93
1926310--1926388	3	26.7	3	97	2	151	34	0	0	65	0.93
1928469--1928851	130	2.9	131	86	1	509	40	16	10	32	1.83
1929111--1929185	3	25.3	3	91	2	125	34	2	0	62	1.09
1929389--1929427	19	2.2	18	86	9	53	30	51	15	2	1.57
1938891--1939084	90	2.2	90	91	1	309	27	18	20	34	1.95
1939189--1939271	42	2.0	42	87	0	121	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1939324--1939394	23	3.4	22	68	22	62	43	12	29	14	1.82
1939314--1939408	40	2.4	40	96	0	172	43	11	26	18	1.84
1939348--1939679	134	2.5	132	85	4	436	34	17	22	25	1.95
1939926--1940127	89	2.2	91	93	1	345	40	15	19	24	1.90
1940055--1940179	52	2.4	52	91	1	207	36	16	17	29	1.91
1940108--1940314	91	2.3	90	87	4	283	39	15	19	25	1.91
1940478--1940525	3	16.3	3	86	4	71	35	4	0	60	1.16
1940719--1940752	17	2.0	17	88	0	50	26	50	20	2	1.63
1946381--1946462	7	11.9	7	78	17	66	4	19	0	75	0.98
1946382--1946446	10	6.9	9	80	16	53	4	20	0	75	0.98
1950253--1950349	44	2.2	44	98	0	185	35	22	14	27	1.93
1951604--1951638	2	17.5	2	88	11	54	45	2	0	51	1.16
1951764--1951799	2	18.0	2	88	11	56	47	2	0	50	1.15
1951482--1951798	160	2.0	156	93	6	541	31	5	12	49	1.65
1964990--1965024	3	12.0	3	93	6	63	34	0	0	65	0.93
1964980--1965024	23	2.0	23	91	8	74	35	0	0	64	0.94
1967091--1967164	2	37.0	2	90	5	114	48	1	0	50	1.09
1975644--1976041	131	3.0	131	91	0	625	39	17	11	31	1.86
1978452--1978478	14	1.9	14	100	0	54	22	0	0	77	0.76
1979987--1980048	3	21.3	3	77	12	67	67	0	3	29	1.06
1981310--1981372	3	21.7	3	87	12	96	66	0	0	33	0.92
1981710--1982460	113	6.7	112	86	3	978	27	20	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981710--1982460	226	3.3	225	89	3	1122	27	20	14	37	1.92
1981711--1982460	335	2.2	338	85	4	1021	27	20	14	37	1.92
1982897--1982949	22	2.4	22	80	0	61	39	11	13	35	1.80
1983319--1983418	50	2.0	50	86	0	137	33	20	12	35	1.89
1985563--1985786	114	2.0	114	90	0	358	30	20	15	33	1.93
1986585--1986645	23	2.7	23	100	0	122	32	11	18	37	1.86
1989922--1989963	7	6.0	7	78	10	50	54	14	16	14	1.71
1992299--1992357	3	20.3	3	75	13	52	67	1	3	27	1.16
1992307--1992368	29	2.2	28	81	16	76	62	3	4	29	1.31
1993621--1993695	3	25.7	3	84	10	102	64	0	1	34	1.02
1999012--1999051	19	2.1	19	90	9	64	67	2	0	30	1.04
1999873--1999917	23	2.1	22	84	12	58	51	2	0	46	1.13
1999798--1999890	37	2.7	36	82	9	104	58	3	0	38	1.15
1999985--2000046	27	2.2	29	80	5	74	51	0	0	48	1.00
2003348--2003399	4	13.2	4	95	4	97	75	0	0	25	0.81
2005479--2005562	3	28.0	3	85	9	118	65	2	0	32	1.05
2005906--2005985	41	1.9	42	84	2	108	33	23	22	20	1.97
2016333--2016391	18	3.2	18	79	15	68	0	18	1	79	0.81
2016338--2016391	13	4.1	14	76	21	55	0	18	1	79	0.82
2016333--2016391	11	5.3	11	75	20	52	0	18	1	79	0.81
2016346--2016420	30	2.7	28	86	10	93	5	16	4	74	1.15
2016342--2016420	28	2.8	29	83	11	92	5	16	3	74	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2025612--2025672	20	2.9	21	87	7	79	18	26	34	21	1.96
2029850--2030399	275	2.0	275	98	1	1068	27	18	16	37	1.92
2034783--2034846	31	2.1	31	87	0	92	56	6	9	28	1.55
2035861--2035925	31	2.1	31	85	0	85	55	7	7	29	1.56
2037575--2037718	43	3.3	43	80	8	168	25	11	18	43	1.84
2037575--2037765	43	4.3	43	79	8	136	25	12	17	45	1.83
2038035--2038096	27	2.3	27	91	5	99	43	6	14	35	1.71
2041473--2041566	24	4.0	24	73	8	75	24	15	19	40	1.90
2041753--2041781	14	2.0	15	93	6	51	48	0	10	41	1.37
2049372--2049427	3	19.3	3	78	14	55	64	5	1	28	1.26
2049372--2049417	19	2.5	18	89	3	65	65	4	2	28	1.23
2049373--2049427	22	2.4	23	84	9	76	65	5	1	27	1.25
2049669--2049770	40	2.5	42	80	7	97	31	24	20	23	1.98
2051830--2052540	55	13.1	54	75	8	403	40	17	9	32	1.81
2051830--2052283	54	8.4	54	77	6	238	41	18	9	30	1.82
2051837--2052034	107	1.9	107	84	6	267	41	20	9	29	1.83
2052046--2052512	55	8.5	55	81	1	526	40	16	9	33	1.81
2051830--2052541	109	6.5	109	80	5	568	40	17	9	32	1.81
2058922--2058982	21	3.0	19	79	13	68	26	37	24	11	1.89
2058924--2058963	20	2.0	20	90	5	62	25	37	25	12	1.91
2063024--2063058	17	2.1	17	100	0	70	22	28	11	37	1.89
2063394--2063469	29	2.7	29	89	2	118	23	2	32	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2064688--2064859	85	2.0	85	92	2	283	31	16	20	31	1.95
2064688--2064880	85	2.3	86	88	1	255	29	17	21	31	1.96
2065078--2065115	19	2.0	20	84	5	51	7	5	7	78	1.07
2065184--2065282	9	11.1	9	76	18	84	3	20	1	75	0.99
2065184--2065282	19	5.6	17	74	19	78	3	20	1	75	0.99
2065179--2065251	13	5.6	12	73	17	56	2	19	0	78	0.88
2065188--2065256	8	7.9	8	80	13	66	1	20	0	78	0.83
2065192--2065258	13	5.1	13	71	18	50	1	20	0	77	0.85
2070340--2070454	3	39.3	3	87	5	173	64	2	0	32	1.13
2070541--2070789	41	6.0	41	79	1	201	36	17	15	30	1.91
2070719--2070806	41	2.1	41	85	0	113	50	15	10	23	1.75
2072491--2072631	74	1.9	73	97	1	264	31	9	11	48	1.71
2080268--2080312	23	2.0	23	82	8	56	75	4	4	15	1.12
2081603--2081664	32	1.9	33	86	3	90	14	16	29	40	1.88
2097918--2097961	17	2.6	17	96	0	79	34	18	18	29	1.94
2097997--2098046	20	2.5	20	90	6	75	28	36	10	26	1.88
2109959--2110010	22	2.5	20	82	11	68	48	23	5	23	1.72
2112033--2112090	22	2.5	22	80	5	62	36	34	1	27	1.67
2116431--2116477	17	2.7	17	75	12	51	21	19	2	57	1.51
2138010--2138048	21	1.9	20	94	5	69	17	41	23	17	1.91
2143616--2143676	19	2.9	20	85	11	70	21	32	26	19	1.97
2144062--2144112	25	2.0	24	85	7	66	56	5	3	33	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2150391--2150435	21	2.3	19	84	7	54	22	15	2	60	1.46
2152775--2153077	60	5.0	60	87	2	410	35	14	21	28	1.92
2153664--2153704	22	1.9	22	85	5	57	26	12	21	39	1.89
2158770--2158801	7	4.7	7	96	3	57	75	0	9	15	1.05
2158761--2158801	14	3.1	13	89	10	57	73	2	7	17	1.17
2159442--2159475	16	2.1	16	100	0	68	5	23	0	70	1.09
2163831--2163887	3	18.7	3	96	3	105	66	0	0	33	0.92
2163889--2163914	2	13.0	2	100	0	52	50	0	0	50	1.00
2170090--2170134	23	2.0	23	86	0	63	20	24	44	11	1.83
2171978--2172048	24	3.0	24	73	8	72	53	15	11	19	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21