genome.fa.s8041.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008041.1 Hibiscus syriacus cultivar Beakdansim tig00110528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4970990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  8  of  21  ( 2430 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814108--1814148	20	2.0	20	90	0	64	21	36	24	17	1.94
1814181--1814243	22	3.0	21	88	6	92	19	39	26	14	1.90
1814183--1814243	21	2.9	21	87	4	79	19	37	27	14	1.91
1815340--1815773	218	2.0	218	97	0	814	38	12	16	32	1.86
1815740--1815787	19	2.5	20	82	3	62	52	6	12	29	1.63
1817182--1817222	20	2.0	20	90	0	64	21	36	24	17	1.94
1817255--1817317	22	3.0	21	88	6	92	19	39	26	14	1.90
1817257--1817317	21	2.9	21	87	4	79	19	37	27	14	1.91
1818346--1818778	216	2.0	214	94	2	753	38	12	16	31	1.86
1820237--1820286	21	2.5	20	93	3	82	16	42	26	16	1.88
1821364--1821796	218	2.0	217	96	0	794	39	12	16	31	1.86
1821763--1821810	19	2.5	20	82	3	62	52	6	12	29	1.63
1823255--1823311	20	2.8	20	94	0	96	17	38	28	15	1.91
1828875--1828979	33	3.0	34	72	13	95	27	14	25	32	1.94
1831792--1831833	22	2.0	20	86	9	57	52	23	0	23	1.47
1832397--1832675	62	4.4	61	76	12	267	29	20	13	36	1.91
1832497--1832556	30	2.0	30	87	6	86	30	16	16	36	1.91
1832684--1832976	89	3.4	86	84	8	316	31	22	18	26	1.97
1832850--1833007	79	2.0	79	98	0	307	37	20	17	24	1.94
1832964--1833341	36	10.4	36	88	1	551	40	17	20	21	1.91
1832964--1833341	109	3.5	109	90	1	555	40	17	20	21	1.91
1833339--1833546	55	3.9	55	75	9	225	28	21	19	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1833346--1833543	102	1.9	102	90	0	315	28	21	19	31	1.97
1833359--1833571	102	2.1	102	84	5	270	33	19	19	27	1.96
1833729--1833796	3	23.0	3	96	3	129	32	0	0	67	0.91
1837538--1837595	7	7.7	7	76	14	53	22	1	1	74	1.01
1838756--1838789	10	3.2	10	91	8	50	76	2	11	8	1.12
1838898--1838931	10	3.2	10	91	8	50	76	2	11	8	1.12
1838742--1839026	142	2.0	142	100	0	570	60	3	15	21	1.50
1839069--1839118	2	25.5	2	95	4	93	52	0	0	48	1.00
1840336--1840376	2	22.0	2	80	14	52	53	0	0	46	1.00
1840315--1840378	23	2.7	25	78	9	71	53	1	0	45	1.10
1840330--1840376	9	5.3	9	85	12	62	53	2	0	44	1.12
1840833--1841355	99	5.1	103	82	6	561	21	18	25	34	1.96
1842416--1842466	15	3.3	15	76	15	50	0	19	1	78	0.85
1846289--1846667	36	10.4	36	90	1	569	40	18	20	21	1.92
1846289--1846667	109	3.5	109	90	1	582	40	18	20	21	1.92
1846665--1846872	55	3.9	55	73	9	207	29	19	19	31	1.96
1846685--1846869	102	1.8	102	89	0	289	30	18	20	30	1.96
1846685--1846897	102	2.1	102	83	5	261	34	17	19	28	1.95
1847056--1847165	3	37.0	3	98	1	213	33	0	0	66	0.92
1848159--1848201	12	3.0	15	81	18	56	44	0	0	55	0.99
1848152--1848201	12	3.7	13	76	23	50	40	2	0	58	1.10
1854421--1854523	15	6.5	15	76	15	100	45	0	2	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1854526--1854568	22	2.0	22	95	0	77	37	0	11	51	1.39
1854503--1855209	54	13.1	54	82	10	815	35	0	12	52	1.41
1854580--1854622	22	2.0	22	100	0	86	34	0	13	51	1.42
1854634--1854676	22	2.0	22	100	0	86	34	0	13	51	1.42
1854688--1854730	22	2.0	22	95	0	77	37	0	11	51	1.39
1854742--1854784	22	2.0	22	100	0	86	34	0	13	51	1.42
1854688--1855026	134	2.6	130	91	3	579	35	0	12	52	1.39
1854876--1854918	22	2.0	22	100	0	86	34	0	13	51	1.42
1854930--1854994	22	3.0	22	93	0	112	36	0	10	52	1.37
1854983--1855035	14	3.5	14	72	18	52	37	0	5	56	1.23
1854997--1855053	18	3.4	18	68	22	52	35	0	10	54	1.35
1855087--1855193	32	3.7	32	76	23	144	34	0	13	52	1.40
1855118--1855160	22	2.0	22	100	0	86	34	0	13	51	1.42
1855010--1855343	134	2.5	134	97	0	632	32	0	14	52	1.44
1855171--1855241	22	3.0	23	76	15	90	28	0	18	53	1.45
1855140--1855289	80	1.9	80	97	0	282	30	0	15	54	1.42
1855252--1855294	22	2.0	22	100	0	86	34	0	13	51	1.42
1854844--1855348	54	9.4	54	72	16	377	34	0	13	52	1.42
1855306--1855348	22	2.0	22	100	0	86	34	0	13	51	1.42
1854503--1855348	242	3.5	239	78	12	1026	34	0	12	52	1.41
1855494--1855546	21	2.5	21	90	0	88	28	26	24	20	1.99
1855542--1855690	21	7.3	21	65	19	82	19	18	26	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855542--1855709	40	4.2	40	94	3	300	19	19	25	36	1.95
1855542--1855822	61	4.6	60	78	10	205	21	19	23	36	1.95
1855542--1855709	82	2.1	80	95	2	300	19	19	25	36	1.95
1855560--1855814	21	12.5	19	71	13	186	20	19	22	37	1.95
1855600--1855814	103	2.1	104	94	3	382	20	19	22	37	1.95
1855701--1855821	42	2.9	42	97	0	224	22	19	21	36	1.95
1856373--1856547	21	8.4	21	70	12	119	34	23	20	21	1.96
1856344--1856522	42	4.3	42	89	1	272	36	22	18	21	1.95
1856747--1856827	32	2.5	32	97	0	153	33	0	12	54	1.38
1856804--1856950	26	5.8	25	71	19	108	29	0	17	53	1.45
1856774--1857004	80	2.9	80	98	0	453	30	0	16	53	1.43
1856878--1856925	22	2.4	18	73	23	51	33	0	14	52	1.42
1856932--1856983	18	3.1	18	68	21	58	26	0	15	57	1.38
1856967--1857009	22	2.0	22	100	0	86	34	0	13	51	1.42
1857034--1857092	31	1.9	31	92	0	100	42	10	6	40	1.65
1857648--1857735	4	21.8	4	70	23	51	72	2	4	20	1.13
1857669--1857722	18	3.4	17	69	26	55	75	3	7	12	1.14
1857669--1857731	29	2.3	27	86	13	85	74	3	6	15	1.15
1857669--1857758	30	3.0	29	84	10	128	74	4	7	13	1.19
1857784--1857818	6	5.8	6	93	0	52	88	8	0	2	0.61
1857782--1857819	12	3.2	12	88	0	58	89	7	0	2	0.57
1858960--1858990	9	3.4	9	95	0	53	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1859047--1859288	38	6.2	40	81	15	253	46	8	1	43	1.43
1859047--1859289	120	2.1	115	82	11	296	46	8	1	44	1.43
1860105--1860305	85	2.4	85	84	3	244	28	14	18	38	1.90
1865955--1866006	17	3.3	17	68	29	51	71	3	7	17	1.25
1865954--1866045	30	3.1	30	78	15	111	70	3	7	18	1.25
1866075--1866125	8	6.1	8	76	15	50	78	1	3	15	0.99
1866080--1866125	18	2.6	17	86	6	56	78	2	4	15	1.01
1867269--1867317	23	2.1	24	85	11	66	71	0	0	28	0.86
1867241--1867316	34	2.3	33	82	8	91	72	1	1	25	1.00
1867331--1867530	38	5.4	37	81	11	214	43	9	2	45	1.48
1867457--1867482	13	2.0	13	100	0	52	46	15	0	38	1.46
1867353--1867538	75	2.5	76	83	10	219	45	10	2	42	1.50
1868359--1868404	20	2.4	19	82	7	65	41	2	8	47	1.46
1868385--1868418	14	2.4	14	90	5	50	41	2	8	47	1.50
1868377--1868653	74	3.8	73	86	7	391	44	4	7	43	1.52
1868377--1868663	35	7.7	38	78	16	298	45	4	7	42	1.52
1868379--1868663	37	7.7	36	75	20	241	45	4	7	42	1.52
1868605--1868663	17	3.2	17	80	17	64	45	1	8	44	1.44
1868600--1868674	20	3.8	20	80	16	102	44	1	8	46	1.41
1868660--1868716	17	3.2	18	78	9	64	33	0	5	61	1.18
1868659--1868717	19	3.2	19	77	20	63	33	0	5	61	1.18
1868598--1868686	39	2.3	37	77	11	90	43	1	6	48	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1869358--1869395	15	2.5	15	95	0	67	57	15	7	18	1.62
1869369--1869402	15	2.3	15	89	0	50	70	11	5	11	1.32
1869967--1870025	29	2.0	31	86	6	86	25	1	3	69	1.13
1873745--1873817	24	3.0	24	79	0	92	36	23	15	24	1.93
1878937--1878981	19	2.4	18	78	10	54	44	0	8	46	1.34
1878981--1879087	22	5.4	22	66	33	82	42	3	9	43	1.54
1878954--1879087	37	3.6	38	89	7	197	43	2	9	44	1.52
1879036--1879065	15	2.0	15	93	0	51	43	0	10	46	1.37
1879050--1879096	22	2.1	22	84	0	58	44	2	6	46	1.40
1879049--1879102	20	2.5	23	82	14	71	40	1	7	50	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21