Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008091.1 Hibiscus syriacus cultivar Beakdansim tig00110602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2471235

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1255 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2344463--2344538
3
24.7
3
70
19
50
6
25
1
67
1.23
2344632--2344660
3
9.7
3
100
0
58
0
34
0
65
0.93
2345957--2346002
21
2.1
22
84
4
58
69
4
10
15
1.32
2346400--2346445
17
2.6
18
89
3
67
34
8
28
28
1.87
2347235--2347293
27
2.2
27
81
0
64
30
20
16
32
1.95
2347248--2347307
27
2.2
27
90
0
93
26
13
18
41
1.87
2347737--2347768
15
2.1
15
94
0
55
62
0
3
34
1.11
2353269--2353319
17
3.0
17
85
0
75
45
13
1
39
1.55
2359955--2360111
84
1.9
84
87
2
235
28
23
20
27
1.99
2361895--2361924
15
2.1
14
93
6
51
16
0
6
76
0.99
2365735--2365768
14
2.4
14
100
0
68
0
35
26
38
1.57
2367500--2367706
56
3.7
54
77
13
179
36
3
2
57
1.28
2367465--2367702
27
8.4
28
75
12
175
36
4
2
57
1.32
2367498--2367706
27
7.5
27
77
9
179
36
3
2
57
1.28
2367692--2367737
10
4.8
10
79
17
53
43
2
0
54
1.12
2368716--2368744
12
2.4
12
100
0
58
13
17
10
58
1.62
2371984--2372013
2
15.0
2
100
0
60
50
0
0
50
1.00
2373251--2373293
21
2.0
21
95
0
77
27
25
18
27
1.98
2378744--2378822
24
3.5
24
80
19
116
25
3
22
48
1.68
2378756--2378795
18
2.2
18
100
0
80
22
5
22
50
1.68
2392985--2393118
60
2.3
59
80
10
148
31
20
4
44
1.71
2396138--2396235
32
3.1
32
80
5
119
38
29
0
31
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2397571--2397623
18
3.0
18
83
8
65
30
1
1
66
1.13
2401424--2401476
19
2.7
19
73
5
52
73
1
3
20
1.08
2410655--2410751
49
2.0
48
94
5
171
53
8
6
31
1.55
2420949--2420984
10
3.7
10
88
3
56
2
36
0
61
1.11
2422182--2422265
22
4.0
22
84
7
104
28
14
26
30
1.95
2438734--2438798
25
2.6
25
87
4
87
32
18
3
46
1.65
2440803--2440900
16
5.9
16
72
5
70
52
1
0
46
1.07
2440816--2440893
33
2.4
33
97
0
147
55
0
0
44
0.99
2440829--2440888
17
3.6
17
81
4
86
56
0
0
43
0.99
2441141--2441336
43
4.5
43
80
6
225
52
6
16
24
1.66
2441141--2441337
87
2.3
86
83
3
243
52
6
16
24
1.66
2451477--2451516
20
2.0
21
85
14
57
42
5
7
45
1.54
2451733--2451890
64
2.5
64
84
4
194
31
22
17
29
1.96
2453159--2453198
20
2.0
21
85
14
57
42
2
7
47
1.45
2453410--2453567
64
2.5
64
87
2
219
31
23
16
28
1.96
2453410--2453588
64
2.8
62
78
13
184
30
24
16
28
1.97
2460890--2460933
21
2.1
21
86
0
61
9
36
15
38
1.80
2461694--2461733
20
2.0
21
85
14
57
42
5
7
45
1.54
2461902--2462107
64
3.2
64
81
8
213
31
23
16
28
1.97
2461950--2462128
64
2.8
62
77
15
177
29
24
17
28
1.97
2463213--2463263
16
3.1
16
75
10
57
41
15
19
23
1.90
2464054--2464188
3
42.0
3
71
20
87
60
1
7
30
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2464065--2464189
23
5.3
23
74
16
89
60
1
8
30
1.35
2464094--2464188
10
9.8
9
73
15
66
61
2
6
30
1.33
2464024--2464172
39
3.7
41
77
11
123
59
1
8
30
1.34
2464062--2464182
40
3.0
38
75
15
102
60
1
8
29
1.36
2465261--2465882
200
3.1
199
81
3
683
25
18
21
34
1.96
2465952--2466132
72
2.5
72
79
5
179
23
22
19
34
1.96
2466208--2466353
43
3.3
43
73
9
125
25
24
20
29
1.99
2466208--2466374
43
3.8
42
72
13
115
26
23
22
28
1.99
2467906--2467944
20
1.9
21
84
5
53
15
15
7
61
1.55
2468500--2468541
20
2.1
20
95
0
75
19
35
28
16
1.93
2469925--2469962
3
13.0
3
86
5
51
68
2
28
0
1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!