genome.fa.s8091.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008091.1 Hibiscus syriacus cultivar Beakdansim tig00110602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2471235

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1743038--1743074	14	2.6	14	91	0	65	45	21	0	32	1.52
1744998--1745156	19	8.6	19	82	7	166	46	23	18	10	1.81
1744998--1745151	52	2.8	55	85	5	188	47	24	18	10	1.79
1745168--1745226	14	3.9	14	76	20	64	6	16	28	47	1.72
1745152--1745275	33	3.7	33	91	1	185	8	17	27	45	1.78
1745152--1745243	19	5.4	18	72	24	83	7	17	28	46	1.75
1745201--1745257	14	3.7	14	72	20	51	8	22	24	43	1.81
1745323--1745595	93	3.1	87	90	6	324	44	18	13	23	1.86
1745372--1745595	93	2.4	93	97	0	421	44	18	14	23	1.86
1747281--1747325	21	2.1	21	100	0	90	53	13	24	8	1.68
1747281--1747374	19	5.1	19	80	15	108	47	18	23	10	1.79
1747386--1747442	14	3.7	14	75	20	60	8	24	22	43	1.81
1747370--1747449	33	2.4	33	95	0	142	8	21	22	47	1.78
1747430--1747503	21	3.5	21	80	7	96	14	20	17	47	1.83
1747583--1747653	33	2.2	33	94	0	124	47	16	23	11	1.79
1748033--1748225	20	9.6	20	85	5	246	18	19	27	34	1.95
1755018--1755045	5	5.6	5	100	0	56	0	0	17	82	0.68
1758470--1758496	11	2.5	11	100	0	54	44	14	22	18	1.86
1767474--1767528	27	2.0	27	100	0	110	32	14	7	45	1.72
1768399--1768471	18	3.9	18	77	7	74	20	17	31	30	1.96
1768397--1768472	38	2.0	38	84	0	98	21	18	30	30	1.97
1778811--1778884	3	24.3	3	80	2	85	0	43	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1778841--1778925	3	27.7	3	85	4	98	0	57	0	42	0.98
1783257--1783317	29	2.1	28	82	14	72	19	13	9	57	1.63
1788966--1789008	22	2.0	22	90	0	68	39	13	27	18	1.89
1791441--1791508	34	2.0	34	94	0	118	44	17	20	17	1.87
1796782--1796835	3	18.0	3	92	0	81	61	0	0	38	0.96
1796782--1796835	15	3.6	15	92	0	90	61	0	0	38	0.96
1797188--1798054	113	7.7	113	94	1	1436	27	18	14	39	1.90
1797998--1798042	23	1.9	23	82	13	56	15	24	6	53	1.66
1800120--1800177	9	6.6	9	86	13	77	0	15	0	84	0.62
1800121--1800183	8	8.1	8	79	11	69	0	15	0	84	0.63
1800121--1800188	22	3.0	22	77	14	77	0	17	0	82	0.67
1800120--1800185	25	2.4	28	76	23	86	0	18	0	81	0.68
1800121--1800183	15	4.1	16	80	11	69	0	15	0	84	0.63
1807235--1807266	15	2.1	15	94	0	55	46	9	18	25	1.79
1812715--1812759	3	15.0	3	95	0	81	64	0	0	35	0.94
1816728--1816782	13	4.2	13	85	0	74	25	20	20	34	1.96
1823854--1823897	22	2.0	23	90	4	72	52	20	0	27	1.47
1823859--1823913	22	2.7	21	83	13	62	50	23	0	25	1.49
1827919--1828037	21	5.8	21	70	6	73	34	26	17	21	1.95
1828025--1828233	20	10.4	20	81	5	217	37	26	16	19	1.92
1828949--1829001	14	3.4	14	72	22	52	7	26	22	43	1.80
1828933--1829026	33	2.8	33	90	3	134	10	21	24	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1828963--1829034	19	3.9	19	68	23	64	12	22	20	44	1.85
1828990--1829045	21	2.7	21	80	8	69	12	23	19	44	1.84
1829125--1829195	33	2.2	33	94	0	124	47	16	23	11	1.79
1829564--1829737	20	8.6	20	85	7	228	18	19	27	33	1.96
1829705--1829756	20	2.6	20	90	0	77	11	17	26	44	1.83
1829724--1829822	42	2.4	42	76	8	96	21	18	23	37	1.94
1836989--1837043	2	27.5	2	100	0	110	50	0	0	49	1.00
1846748--1846791	19	2.3	20	78	21	51	38	15	20	25	1.92
1854892--1854986	24	3.9	24	93	2	154	36	7	12	43	1.71
1854892--1854986	49	2.0	48	91	2	154	36	7	12	43	1.71
1855758--1855843	40	2.1	41	95	2	156	44	2	12	40	1.55
1855783--1855843	20	3.0	21	65	13	54	45	1	11	40	1.50
1867211--1867336	60	2.1	60	90	0	198	34	18	30	15	1.92
1867553--1867901	43	8.2	42	77	5	272	50	5	18	24	1.69
1867593--1867846	42	6.0	42	76	5	188	50	5	20	23	1.70
1867589--1867842	127	2.0	128	81	3	298	50	5	20	24	1.70
1867581--1867901	85	3.8	84	77	6	256	50	5	19	24	1.69
1868312--1868372	2	30.5	2	96	0	113	50	1	0	47	1.10
1869225--1869557	111	3.0	111	96	0	612	35	7	11	45	1.68
1871050--1871084	18	1.9	18	100	0	70	28	17	25	28	1.97
1871424--1871475	27	1.9	27	88	0	77	34	17	34	13	1.89
1871691--1871775	35	2.5	33	78	14	91	25	8	10	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1877441--1877502	25	2.4	25	78	8	61	70	6	1	20	1.17
1881057--1881140	27	3.0	27	72	16	82	44	2	1	52	1.21
1887863--1888530	334	2.0	335	98	0	1293	38	11	7	42	1.70
1888568--1888644	23	3.5	20	74	19	64	40	20	3	35	1.71
1888583--1888645	23	2.7	23	95	0	108	38	19	4	38	1.73
1889047--1889133	39	2.2	39	95	0	156	17	13	20	48	1.81
1889391--1889427	18	2.1	18	89	0	56	51	10	5	32	1.60
1889923--1889974	23	2.2	24	93	6	90	44	21	0	34	1.52
1889923--1889995	23	3.2	22	84	7	83	41	21	2	34	1.68
1890423--1890485	23	2.7	23	92	0	99	38	20	4	36	1.74
1889757--1891322	490	3.2	490	98	0	2979	41	12	7	38	1.71
1890917--1890975	23	2.6	23	88	0	82	40	16	5	37	1.71
1891321--1891386	25	2.6	25	80	0	87	42	13	9	34	1.76
1893857--1894199	183	1.9	183	91	2	564	34	17	14	34	1.90
1895491--1895571	3	27.0	3	78	0	81	24	34	4	35	1.77
1895495--1895583	12	7.4	12	81	0	79	22	34	6	35	1.81
1895507--1895583	36	2.1	36	92	0	127	22	35	7	35	1.83
1895525--1895586	18	3.4	18	79	0	79	19	35	8	37	1.81
1897048--1898018	198	4.9	199	97	0	1797	30	16	15	36	1.90
1897048--1898018	397	2.4	397	96	1	1804	30	16	15	36	1.90
1898137--1898185	19	2.6	19	93	0	80	57	10	2	30	1.43
1899975--1900040	33	2.0	33	90	0	105	22	48	0	28	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1900074--1900138	21	3.1	21	79	0	76	16	30	13	38	1.88
1902359--1902401	20	2.3	18	85	14	61	20	16	11	51	1.75
1902364--1902410	20	2.4	19	82	10	67	19	17	10	53	1.72
1902532--1902577	20	2.3	20	89	10	76	17	17	10	54	1.70
1913310--1913422	37	3.1	37	88	0	163	33	19	23	23	1.97
1916084--1916452	20	18.5	20	85	4	458	34	26	18	20	1.96
1917126--1917172	24	2.0	24	87	8	69	25	14	21	38	1.92
1918036--1918125	14	5.7	14	74	23	81	42	23	25	8	1.83
1918028--1918142	33	3.5	33	95	0	212	45	20	24	9	1.81
1918035--1918147	19	6.8	18	72	23	88	43	22	24	9	1.83
1918159--1918213	14	3.6	14	73	21	56	9	27	23	40	1.85
1918334--1918404	33	2.2	33	92	0	115	47	18	22	11	1.80
1918586--1918640	22	2.5	22	81	0	74	20	16	40	23	1.91
1918786--1918979	20	9.6	20	82	5	221	19	19	25	35	1.95
1918786--1918979	60	3.2	60	83	0	253	19	19	25	35	1.95
1918972--1919048	21	3.7	20	70	13	57	27	16	23	32	1.96
1919034--1919085	20	2.6	20	96	0	95	21	13	26	38	1.90
1920532--1920649	39	3.1	38	75	15	109	45	0	16	36	1.54
1923766--1923795	15	2.0	15	100	0	60	13	26	46	13	1.80
1930343--1930400	20	2.9	20	87	7	82	36	27	8	27	1.86
1930565--1930606	22	2.0	21	86	9	59	23	40	14	21	1.90
1930937--1930974	20	1.9	20	94	0	67	55	23	10	10	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932329--1932426	42	2.3	43	82	5	119	29	30	18	21	1.97
1932999--1933096	21	4.7	21	86	5	135	22	35	19	22	1.96
1932993--1933096	42	2.5	42	88	0	154	22	36	19	22	1.95
1934783--1934818	18	2.0	18	94	0	63	16	2	25	55	1.55
1937083--1937136	24	2.2	24	93	0	90	40	16	18	24	1.90
1939633--1939731	49	2.0	50	92	2	164	23	21	18	37	1.94
1939683--1939880	76	2.6	76	89	0	297	24	20	17	37	1.94
1940168--1940530	35	10.3	35	73	11	251	46	7	13	33	1.71
1940173--1940476	35	8.6	35	76	8	269	46	7	13	32	1.71
1940173--1940494	70	4.5	72	83	5	370	46	7	13	32	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11