genome.fa.s8091.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008091.1 Hibiscus syriacus cultivar Beakdansim tig00110602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2471235

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241105--241255	19	8.7	19	64	21	80	15	22	20	41	1.89
241109--241235	33	3.9	32	87	8	193	14	22	19	42	1.88
241102--241234	66	2.0	66	97	0	248	16	22	19	41	1.90
244830--244907	20	3.9	20	91	0	120	38	21	21	17	1.93
245026--245062	14	2.6	14	86	0	56	48	21	0	29	1.50
246908--247044	32	3.9	37	77	13	107	43	24	19	12	1.85
246927--247025	19	5.5	18	76	21	91	41	23	22	13	1.88
246982--247039	14	3.9	14	79	16	71	48	25	17	8	1.75
246966--247044	32	2.4	33	95	2	142	46	24	18	10	1.80
247051--247132	19	4.6	19	75	14	77	12	19	20	47	1.81
247118--247160	20	2.2	20	87	4	61	18	23	20	37	1.94
247126--247171	20	2.3	20	88	0	65	15	21	26	36	1.93
247644--247688	18	2.5	18	85	0	63	15	15	42	26	1.87
249008--249045	20	1.9	20	88	0	58	50	21	15	13	1.78
249309--249352	22	2.0	22	90	0	70	20	15	43	20	1.88
252746--252786	2	20.5	2	100	0	82	51	0	0	48	1.00
254058--254324	42	6.3	43	83	3	308	33	19	23	23	1.97
254089--254324	126	1.9	128	87	3	352	32	19	23	24	1.97
256590--256616	12	2.2	12	100	0	54	62	7	14	14	1.51
256900--257044	41	3.7	40	75	15	151	30	19	22	28	1.98
256901--257046	75	1.9	75	86	5	206	30	19	21	28	1.97
256970--257146	82	2.2	82	80	2	194	32	17	19	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257319--257435	59	2.0	60	84	5	157	31	17	6	43	1.76
259286--259343	29	2.0	29	89	0	89	15	36	25	22	1.94
259394--259446	23	2.3	23	83	0	70	26	22	37	13	1.91
259464--259519	29	1.9	29	92	0	94	19	28	37	14	1.91
259578--259663	29	3.0	29	91	3	129	22	30	34	12	1.91
260000--260060	26	2.4	24	76	10	59	63	4	0	31	1.15
263864--263945	29	2.8	29	94	1	137	32	14	9	42	1.79
268627--268708	29	2.8	29	94	1	137	32	14	9	42	1.79
269726--269822	2	48.5	2	83	8	108	49	5	2	43	1.36
270084--270131	4	11.8	4	91	4	78	22	2	0	75	0.91
272730--272774	3	15.0	3	95	0	81	64	0	2	33	1.06
281190--281215	8	3.2	8	100	0	52	26	11	50	11	1.73
281504--281580	40	1.9	40	89	5	120	51	9	12	25	1.69
287399--287436	20	2.0	19	90	10	60	26	15	5	52	1.64
298224--298253	13	2.3	13	100	0	60	63	6	6	23	1.43
314692--314720	13	2.2	13	100	0	58	13	24	44	17	1.85
314697--314740	18	2.4	18	88	0	61	13	18	50	18	1.79
318725--318777	15	3.5	15	92	7	81	7	32	0	60	1.25
321493--321643	2	75.5	2	100	0	302	50	0	0	49	1.00
322986--323109	60	2.1	60	80	11	139	41	13	11	33	1.80
323347--323416	36	1.9	36	94	0	122	48	17	4	30	1.66
325127--325258	43	3.1	41	81	7	138	27	21	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325460--325518	21	2.8	21	84	0	73	55	20	5	18	1.61
327446--327786	41	8.3	41	82	4	346	33	19	18	29	1.95
327446--327786	165	2.1	165	86	3	463	33	19	18	29	1.95
329381--329414	4	8.5	4	100	0	68	23	0	52	23	1.47
331690--331762	37	2.1	35	84	7	94	46	0	2	50	1.15
355112--355165	28	2.0	27	85	3	72	31	14	16	37	1.89
358600--358676	29	2.7	29	100	0	154	14	35	25	24	1.93
358738--358769	14	2.3	14	94	0	55	6	31	37	25	1.81
374388--374427	21	1.9	21	89	0	62	25	40	25	10	1.86
378555--378610	24	2.4	22	77	11	58	58	12	5	23	1.54
378710--378779	26	2.7	26	90	2	104	27	24	17	31	1.97
383650--383689	21	1.9	21	85	10	55	47	10	0	42	1.37
383848--383904	21	2.8	21	86	2	71	54	1	1	42	1.21
386663--386849	60	3.1	59	81	5	189	36	4	23	35	1.75
388552--388636	31	2.7	32	85	5	111	25	10	15	48	1.77
388946--388993	21	2.2	21	82	10	53	50	18	8	22	1.74
389436--389475	21	1.9	21	89	0	62	40	0	2	57	1.12
389441--389483	21	2.0	21	82	8	52	41	0	0	58	0.98
389458--389514	29	2.0	28	86	3	78	38	1	0	59	1.08
403820--403880	31	2.0	31	96	0	113	31	18	16	34	1.93
412812--412846	14	2.5	14	100	0	70	14	14	14	57	1.66
412964--412990	13	2.1	13	100	0	54	22	0	22	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414399--414507	31	3.5	31	93	1	173	29	15	11	44	1.81
422447--422471	4	6.2	4	100	0	50	24	0	0	76	0.80
428471--428508	16	2.3	16	86	13	51	68	0	2	28	1.03
432321--432355	15	2.2	16	95	5	63	60	0	14	25	1.35
434012--434046	15	2.2	16	90	5	54	42	2	5	48	1.41
434077--434120	17	2.6	17	85	0	52	47	0	4	47	1.22
434698--434735	19	2.0	20	84	5	51	55	13	5	26	1.59
435664--435695	11	2.9	11	100	0	64	0	28	56	15	1.40
435897--435962	24	2.6	25	79	15	75	45	0	0	54	0.99
435996--436039	13	3.5	13	90	3	63	15	15	50	18	1.79
439957--439985	4	7.2	4	100	0	58	24	48	0	27	1.51
440236--440275	16	2.5	16	87	0	62	55	20	0	25	1.44
444200--444276	4	19.2	4	97	0	145	50	23	0	25	1.49
446463--446528	18	3.8	18	88	8	109	34	4	33	27	1.77
447549--448012	30	15.2	30	75	6	333	28	40	9	21	1.85
447523--448043	60	8.4	60	83	6	582	28	39	9	21	1.85
447872--448040	36	5.0	36	74	11	151	28	44	7	19	1.77
448682--448719	2	19.0	2	100	0	76	50	0	0	50	1.00
449850--449887	18	2.1	18	100	0	76	55	10	5	28	1.56
450202--451323	30	37.4	30	74	4	794	31	40	8	20	1.81
450292--451308	120	8.5	120	82	4	1030	31	40	8	20	1.82
450378--450462	24	3.3	24	71	17	71	32	43	5	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461944--461978	17	1.9	19	88	11	56	51	8	2	37	1.47
462277--462304	2	14.0	2	100	0	56	50	0	0	50	1.00
462277--462317	18	2.2	20	86	8	59	48	4	2	43	1.37
462504--462556	18	2.7	19	77	14	54	24	28	24	22	2.00
462834--462862	14	2.0	15	93	6	51	13	13	13	58	1.63
463207--463245	20	2.0	20	100	0	78	25	33	30	10	1.89
464271--464324	23	2.5	22	84	6	65	24	25	25	24	2.00
464288--464346	23	2.6	23	89	2	84	20	25	30	23	1.98
468224--468444	117	1.9	118	82	6	279	28	15	9	47	1.75
489951--490084	49	2.7	50	95	2	243	36	8	14	40	1.76
491371--491410	15	2.7	15	84	7	55	12	32	20	35	1.90
491362--491408	9	5.2	9	75	10	51	12	34	19	34	1.89
491752--491805	18	3.0	18	91	0	90	25	16	27	29	1.97
493285--493507	112	2.0	111	92	0	374	45	10	7	35	1.68
493633--493668	10	3.5	11	88	11	51	41	0	25	33	1.55
498857--499252	75	5.3	74	82	10	461	46	2	5	44	1.41
498857--499273	39	11.1	38	80	12	411	46	2	5	45	1.40
499296--499328	3	11.0	3	87	12	50	33	0	0	66	0.92
506214--506255	22	1.9	22	90	0	66	30	11	16	40	1.85
510825--510883	31	1.9	31	92	0	100	44	6	11	37	1.68
510830--510883	17	3.4	17	70	15	51	44	5	12	37	1.66
513407--513462	28	2.1	27	78	18	64	39	3	5	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524511--524885	6	63.0	6	98	1	729	50	33	0	16	1.46
524523--524884	8	45.4	8	67	0	78	50	33	0	16	1.45
528206--528238	15	2.2	15	94	0	57	54	12	24	9	1.66
533992--534263	66	4.1	66	90	2	431	40	12	22	23	1.89
534485--534795	96	3.2	96	83	3	378	37	17	21	23	1.93
534800--536115	274	4.8	271	83	4	1485	30	15	20	33	1.94
534780--536120	547	2.5	543	82	5	1625	30	15	20	33	1.94
538842--538918	23	3.3	23	63	20	59	48	6	7	37	1.58
538829--538925	48	2.0	48	97	0	185	47	8	8	36	1.63
538829--538905	25	3.2	25	62	20	63	51	7	6	33	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11