genome.fa.s8091.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008091.1 Hibiscus syriacus cultivar Beakdansim tig00110602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2471235

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  9  of  11  ( 1255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940273--1940369	17	5.6	17	65	13	54	45	8	15	30	1.75
1940173--1940530	71	5.1	70	81	7	336	46	7	12	33	1.70
1943035--1943089	28	2.0	26	89	6	83	76	0	23	0	0.79
1943035--1943073	12	3.3	12	85	3	53	79	0	20	0	0.73
1945375--1945430	22	2.5	22	91	2	94	53	0	37	8	1.32
1951637--1951715	21	3.5	22	75	15	81	29	24	21	25	1.99
1951638--1951734	44	2.2	44	87	7	135	28	20	22	27	1.99
1951935--1951960	3	8.7	3	100	0	52	34	0	0	65	0.93
1958309--1958419	49	2.2	48	84	7	134	16	36	27	19	1.93
1958393--1958492	39	2.5	39	91	3	155	16	33	31	20	1.94
1961917--1962003	35	2.5	36	82	15	103	55	11	8	25	1.63
1962216--1962266	21	2.4	21	90	0	75	13	35	19	31	1.91
1962217--1962266	18	2.8	18	84	0	64	14	36	18	32	1.90
1962216--1962263	15	3.2	15	81	0	60	14	35	18	31	1.91
1962367--1962391	9	2.8	9	100	0	50	48	12	28	12	1.76
1964154--1964367	111	1.9	111	93	1	367	44	10	7	37	1.68
1964661--1964768	49	2.2	49	80	3	119	21	26	33	18	1.96
1967019--1967101	33	2.6	31	78	14	80	44	1	0	54	1.08
1967062--1967104	21	2.0	21	91	8	70	53	0	0	46	1.00
1967001--1967082	42	2.0	42	83	13	107	42	1	1	54	1.15
1966983--1967102	42	2.6	45	69	18	106	47	0	0	50	1.12
1967315--1967352	18	2.1	18	100	0	76	50	15	15	18	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1969140--1969167	14	2.0	14	100	0	56	21	28	14	35	1.92
1973698--1973792	8	12.2	8	70	17	58	26	1	2	70	1.05
1973741--1973786	20	2.4	19	88	3	65	23	0	2	73	0.94
1976020--1976077	20	2.7	20	86	10	71	27	22	18	31	1.97
1976065--1976201	64	2.2	63	82	6	161	24	24	18	32	1.97
1977372--1977410	14	2.8	14	88	0	60	23	0	2	74	0.94
1978401--1978484	36	2.3	36	79	0	87	39	3	42	14	1.63
1980302--1981023	83	8.8	82	77	7	490	29	20	16	33	1.94
1980391--1981021	239	2.6	245	80	8	723	30	20	15	33	1.94
1980302--1981018	166	4.4	165	77	5	661	29	20	16	33	1.94
1986986--1987050	32	2.0	32	85	5	87	33	1	0	64	1.03
1992595--1992626	15	2.1	15	94	0	55	25	18	9	46	1.79
1999899--1999951	20	2.6	21	77	17	58	75	0	13	11	1.05
2001503--2001952	113	4.0	113	92	0	733	38	13	18	29	1.89
2002227--2002261	4	8.5	4	96	3	61	22	0	0	77	0.78
2004694--2004738	23	2.0	23	90	0	72	51	22	2	24	1.60
2005013--2005073	23	2.6	24	82	7	81	39	21	24	14	1.91
2013512--2013554	4	10.8	4	100	0	86	74	0	0	25	0.82
2015900--2015957	31	1.9	30	82	10	73	56	1	10	31	1.43
2016499--2016603	3	35.3	3	98	1	203	67	0	0	32	0.91
2020073--2020141	21	3.2	21	74	11	77	46	0	1	52	1.09
2020076--2020158	43	2.0	41	92	4	139	43	0	1	55	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2021149--2021239	40	2.3	40	94	3	157	35	23	6	35	1.81
2026553--2026856	149	2.0	149	99	0	599	35	20	16	27	1.94
2026942--2026998	30	2.0	28	86	6	78	31	24	5	38	1.78
2027020--2027090	29	2.5	28	90	2	106	39	12	9	38	1.77
2027388--2027535	65	2.2	66	88	5	219	16	27	27	29	1.97
2030147--2030464	54	6.1	54	86	7	451	27	18	19	33	1.96
2030366--2030453	43	2.0	43	93	0	149	31	15	18	34	1.92
2030312--2030489	97	1.8	97	82	2	232	30	16	19	33	1.94
2031184--2031234	21	2.4	21	100	0	102	35	13	17	33	1.89
2033457--2033483	9	3.0	9	100	0	54	22	33	22	22	1.97
2034698--2034988	21	14.0	21	71	14	201	21	19	23	36	1.95
2034723--2034985	42	6.3	41	93	0	420	20	19	23	36	1.95
2035692--2035925	21	11.4	21	64	20	104	36	23	18	21	1.95
2035688--2035946	40	6.3	42	94	3	449	35	23	18	21	1.95
2035688--2035946	82	3.2	82	94	2	459	35	23	18	21	1.95
2035980--2036032	21	2.5	21	93	0	88	20	22	28	28	1.99
2036753--2036806	13	4.4	13	77	13	60	18	48	18	14	1.82
2036746--2036799	23	2.3	23	90	0	81	18	51	18	11	1.74
2039201--2039272	24	3.0	24	83	0	90	19	12	19	48	1.80
2043781--2043840	12	5.0	12	78	8	68	16	15	18	50	1.79
2043781--2043840	24	2.5	24	86	0	84	16	15	18	50	1.79
2053324--2053536	106	2.0	106	98	0	408	44	17	10	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2053919--2053959	14	2.9	14	100	0	82	58	0	36	4	1.20
2055166--2055195	12	2.5	12	94	0	51	40	10	0	50	1.36
2055639--2055739	18	5.4	18	85	11	132	29	10	5	53	1.59
2057132--2057156	10	2.5	10	100	0	50	20	8	20	52	1.71
2057428--2057481	26	2.1	26	89	0	81	27	7	22	42	1.80
2057442--2057485	13	3.4	13	74	0	52	31	6	20	40	1.79
2066485--2067606	2	563.5	2	77	1	737	38	47	11	3	1.55
2066485--2067606	18	61.4	18	74	8	811	38	47	11	3	1.55
2071477--2071517	13	3.2	13	85	0	64	43	17	19	19	1.88
2071477--2071531	26	2.1	27	89	3	85	45	16	18	20	1.86
2071493--2071559	21	3.2	21	89	6	84	40	17	19	22	1.92
2071503--2071559	21	2.8	21	94	2	98	42	15	19	22	1.89
2074536--2074597	3	20.7	3	100	0	124	67	0	0	32	0.91
2076386--2076480	31	3.2	28	77	10	93	40	7	13	38	1.73
2076562--2076621	31	2.0	31	83	3	77	45	11	8	35	1.71
2094949--2094985	19	2.0	19	89	5	58	29	5	0	64	1.15
2100015--2100953	469	2.0	467	96	0	1716	32	17	12	36	1.89
2108643--2108675	16	2.1	16	100	0	66	36	6	21	36	1.78
2116496--2118203	874	2.0	875	85	2	2324	28	21	15	34	1.94
2118796--2118837	23	1.9	22	85	9	59	26	16	26	30	1.97
2120666--2120691	4	6.5	4	100	0	52	50	0	0	50	1.00
2124677--2124727	22	2.3	22	96	0	93	37	31	7	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2127415--2127472	25	2.3	26	84	6	82	53	6	8	31	1.58
2128957--2129023	20	3.4	18	80	13	71	23	20	23	31	1.98
2132923--2132977	25	2.3	23	70	11	58	29	10	9	50	1.68
2137967--2137993	2	13.5	2	100	0	54	51	0	0	48	1.00
2145427--2145471	5	9.2	5	77	22	51	80	0	2	17	0.82
2146246--2146286	21	2.0	21	95	0	73	24	24	24	26	2.00
2146308--2146368	21	2.9	21	95	4	106	22	19	27	29	1.98
2146857--2146917	22	2.8	22	87	0	86	22	24	19	32	1.97
2148111--2148216	45	2.3	45	85	4	133	31	19	18	30	1.96
2148509--2148552	20	2.2	20	100	0	88	38	6	9	45	1.63
2152121--2152196	36	2.1	36	97	0	143	31	10	14	43	1.79
2153391--2153438	21	2.3	21	96	0	87	41	12	18	27	1.86
2158052--2158099	21	2.3	21	96	0	87	41	12	18	27	1.86
2163219--2163277	3	20.0	3	92	3	102	33	0	0	66	0.92
2171977--2172004	2	14.0	2	100	0	56	0	50	0	50	1.00
2173045--2173108	2	32.0	2	100	0	128	50	0	0	50	1.00
2179768--2179884	39	3.0	40	76	15	120	38	13	0	47	1.49
2180042--2180090	2	24.5	2	100	0	98	48	0	0	51	1.00
2181515--2181548	14	2.5	14	90	4	52	47	29	0	23	1.52
2182841--2183088	20	12.4	20	74	11	154	41	22	14	21	1.89
2182884--2183067	100	1.8	100	80	6	221	41	21	14	22	1.89
2182811--2183076	80	3.3	81	75	11	278	42	20	13	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2182817--2183107	80	3.6	78	72	14	236	42	21	13	22	1.88
2182915--2183147	40	5.8	39	71	11	141	39	21	13	25	1.90
2182915--2183147	20	11.7	20	75	11	117	39	21	13	25	1.90
2183303--2183340	15	2.4	16	86	4	51	28	7	0	63	1.23
2186827--2186880	28	1.9	28	84	0	72	48	20	0	31	1.50
2186844--2186880	14	2.6	14	100	0	74	48	21	0	29	1.50
2186779--2186934	79	2.0	78	94	1	276	50	17	1	30	1.55
2188235--2188268	17	2.0	17	94	0	59	26	17	38	17	1.92
2188336--2188455	21	5.7	21	81	3	116	25	18	34	22	1.96
2188336--2188454	42	2.8	42	79	2	132	25	18	33	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11