genome.fa.s8091.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008091.1 Hibiscus syriacus cultivar Beakdansim tig00110602_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2471235

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1255 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550751--550889	59	2.4	58	80	4	145	32	19	3	44	1.68
550938--551065	60	2.1	60	87	5	179	35	6	26	31	1.81
550972--551094	60	2.0	60	81	3	140	39	5	22	32	1.78
551884--551962	34	2.3	34	95	0	140	50	10	10	29	1.68
552715--552741	3	9.0	3	100	0	54	33	0	0	66	0.92
556568--556646	30	2.6	30	84	4	97	43	5	6	45	1.51
558768--558815	21	2.3	20	79	10	53	52	4	2	41	1.32
561307--561338	14	2.3	14	94	0	55	68	3	0	28	1.04
561507--561558	13	3.8	13	76	14	50	44	0	1	53	1.11
565969--566480	256	2.0	256	96	0	936	23	16	16	43	1.87
576625--576663	20	1.9	20	89	5	60	43	23	10	23	1.84
578105--578156	21	2.6	21	90	6	81	34	13	5	46	1.67
578882--578927	12	3.8	12	76	18	51	80	2	15	2	0.91
578881--578939	24	2.3	26	86	13	88	77	3	13	5	1.05
582062--582113	21	2.6	21	90	6	81	34	13	5	46	1.67
583394--583461	18	3.8	17	75	9	64	20	22	17	39	1.92
586593--586644	17	3.0	16	78	13	50	25	15	9	50	1.74
587821--587891	22	3.2	22	97	0	133	40	38	14	7	1.73
590108--590203	50	1.9	50	97	0	183	51	8	7	33	1.60
604247--604287	20	2.0	20	85	4	55	34	0	4	60	1.18
605864--605892	12	2.3	13	94	5	51	0	6	6	86	0.72
607039--607070	12	2.7	12	100	0	64	34	6	34	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614692--614726	12	3.0	12	87	4	54	11	14	8	65	1.46
615057--615097	8	5.2	8	80	16	50	85	2	0	12	0.70
619360--619407	12	4.1	12	91	2	80	10	14	8	66	1.43
620768--620806	16	2.4	16	86	0	51	7	15	0	76	0.99
623047--623086	12	3.3	12	85	0	53	50	10	0	40	1.36
627232--627257	4	6.5	4	100	0	52	26	0	23	50	1.50
630564--630625	32	1.9	32	86	0	88	25	16	8	50	1.72
631119--631207	31	2.8	32	84	1	126	57	10	15	16	1.65
633395--633423	15	1.9	15	100	0	58	13	27	41	17	1.87
637197--637301	52	2.0	52	100	0	210	26	9	32	31	1.88
643236--643373	21	6.7	21	71	6	77	36	24	17	21	1.94
643340--643569	20	11.5	20	81	5	232	36	24	18	19	1.94
646744--646974	33	6.7	34	81	14	237	46	18	22	13	1.83
646786--647011	52	4.3	52	97	1	418	45	17	23	14	1.85
646844--647005	33	4.8	33	75	16	161	45	17	22	14	1.84
647001--647097	19	5.7	18	74	22	93	13	24	18	43	1.86
647001--647105	52	2.0	52	92	3	176	14	23	18	43	1.86
647020--647097	19	4.4	19	78	18	96	14	23	17	44	1.85
648625--648690	21	3.2	21	69	2	62	19	18	36	25	1.94
649214--649300	29	2.8	30	86	8	122	44	20	21	12	1.85
649140--649307	19	9.6	19	73	17	123	45	23	19	11	1.83
649303--649431	19	7.3	19	71	17	107	9	16	27	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649303--649394	33	2.8	33	88	3	132	8	17	27	46	1.77
649479--649757	89	3.1	92	94	4	494	45	18	13	22	1.84
651454--651550	20	5.2	20	72	18	100	46	17	24	11	1.81
651452--651516	21	3.1	21	82	4	96	47	15	26	10	1.78
651501--651557	14	3.7	14	75	20	60	43	22	24	8	1.81
651452--651574	33	3.5	33	90	8	165	46	18	24	10	1.81
651591--651647	14	3.7	14	75	20	60	8	24	22	43	1.81
651575--651655	33	2.5	33	95	0	144	8	22	22	46	1.78
651632--651707	21	3.7	21	83	3	109	11	25	17	46	1.82
651631--651708	41	1.9	41	97	0	147	12	25	16	44	1.83
651787--651857	33	2.2	33	89	5	108	46	18	23	11	1.81
652039--652093	22	2.5	22	81	0	74	20	16	40	23	1.91
652240--652433	20	9.6	20	82	5	221	19	19	25	35	1.95
652240--652433	60	3.2	60	83	0	253	19	19	25	35	1.95
652420--652502	21	4.0	21	73	6	78	25	16	24	33	1.96
652400--652498	42	2.4	43	77	11	100	21	18	23	37	1.94
654416--654498	42	2.0	42	85	2	114	33	6	13	46	1.67
654635--654668	16	2.1	16	89	10	52	41	0	0	58	0.98
657754--657795	21	2.0	21	90	0	66	28	23	4	42	1.74
658233--658307	33	2.3	33	90	0	114	9	38	26	25	1.86
658374--658431	29	2.0	29	89	0	89	22	27	36	13	1.92
658775--658955	88	2.1	88	100	0	362	30	16	7	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659351--659376	13	2.0	13	100	0	52	46	0	0	53	1.00
660044--660375	167	2.0	165	97	1	628	41	6	9	42	1.64
660830--660881	23	2.3	23	82	0	59	51	17	11	19	1.75
665420--665473	22	2.5	22	79	11	65	29	22	25	22	1.99
667861--667913	2	26.5	2	100	0	106	49	0	0	50	1.00
677019--677053	18	1.9	18	88	0	52	54	2	11	31	1.51
685162--685225	3	20.7	3	76	12	58	35	3	3	57	1.30
688533--688613	29	2.8	29	81	9	85	45	9	3	40	1.55
688562--688636	29	2.6	29	82	4	98	38	13	2	45	1.57
688628--688698	29	2.4	29	83	0	88	42	18	5	33	1.74
689327--689384	21	2.6	22	83	8	73	32	1	5	60	1.29
695894--695962	29	2.3	30	85	7	88	42	13	1	43	1.52
695954--696020	29	2.3	29	81	0	80	40	19	4	35	1.72
696658--696715	21	2.6	22	83	8	73	32	1	5	60	1.29
711905--712006	35	2.8	36	91	5	161	31	5	17	45	1.72
715282--715314	17	1.9	17	93	0	57	15	18	39	27	1.90
715172--715330	64	2.5	64	86	5	191	25	20	25	29	1.99
715283--715327	17	2.6	17	85	3	54	20	17	33	28	1.95
716965--717080	41	2.8	41	94	3	198	28	21	25	24	1.99
720890--720929	21	1.9	21	85	10	55	35	10	2	52	1.48
722863--722911	19	2.7	17	84	9	53	26	20	28	24	1.99
725615--725716	35	2.8	36	92	5	170	30	6	18	44	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728876--729024	63	2.4	62	81	8	167	25	20	24	30	1.99
728976--729008	17	1.9	17	93	0	57	15	18	39	27	1.90
728977--729021	17	2.6	17	85	3	54	20	17	33	28	1.95
734754--734793	21	1.9	21	85	10	55	35	10	2	52	1.48
736745--736792	18	2.7	18	93	3	80	29	20	22	27	1.99
740592--740632	6	6.8	6	100	0	82	0	51	14	34	1.43
750165--750209	21	2.1	21	87	0	63	31	28	24	15	1.96
751635--751840	30	6.8	31	94	0	197	23	22	23	30	1.99
751671--751860	30	6.3	30	96	1	337	22	23	24	30	1.99
753023--753075	24	2.2	24	100	0	106	30	33	24	11	1.90
756467--756518	24	2.2	24	82	6	61	36	1	7	53	1.41
758363--758398	18	2.0	18	88	0	54	11	27	22	38	1.88
759954--760000	23	2.0	23	84	8	60	12	17	14	55	1.70
762620--762658	21	1.9	20	89	5	60	71	2	0	25	0.98
763076--763159	24	3.5	24	100	0	168	25	25	20	29	1.99
766673--766705	13	2.4	14	90	5	50	36	0	3	60	1.12
768869--768914	20	2.2	20	84	7	56	60	10	17	10	1.57
769136--769167	12	2.7	12	100	0	64	25	37	9	28	1.87
771966--772002	6	6.2	6	100	0	74	67	0	16	16	1.23
772601--773118	279	1.9	279	90	1	707	38	19	16	26	1.92
774759--774797	2	19.5	2	100	0	78	48	0	0	51	1.00
774954--774990	20	1.9	19	89	10	58	45	10	24	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777034--777073	19	2.1	19	85	0	53	52	2	2	42	1.28
779565--779636	31	2.4	31	88	6	103	44	4	5	45	1.46
779653--779689	20	1.9	18	89	10	56	45	8	0	45	1.32
779655--779820	31	5.8	29	73	19	129	44	6	4	44	1.49
779661--779819	56	2.9	56	82	9	193	44	6	4	44	1.51
779787--779861	22	3.5	22	80	12	84	46	2	6	44	1.43
779797--779840	20	2.2	20	91	0	70	45	2	9	43	1.48
780196--780390	101	1.9	101	83	6	252	33	31	3	30	1.75
782577--782629	22	2.4	22	81	6	63	45	16	15	22	1.85
782653--782694	21	2.0	22	85	4	59	23	28	23	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11