genome.fa.s8097.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008097.1 Hibiscus syriacus cultivar Beakdansim tig00110621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3094402

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2930121--2930237	20	6.2	20	75	11	86	17	17	23	40	1.91
2930136--2930238	53	1.9	54	88	2	154	15	17	24	42	1.88
2930121--2930259	73	1.9	73	88	2	208	20	16	21	41	1.91
2931235--2931608	190	2.0	186	97	2	712	36	16	16	30	1.91
2932173--2932215	19	2.2	20	87	4	61	48	20	13	16	1.80
2932202--2932270	20	3.5	20	88	4	95	39	24	17	18	1.92
2932262--2932342	34	2.4	35	85	8	114	46	19	18	14	1.83
2932346--2932382	19	1.9	19	100	0	74	5	16	29	48	1.68
2932404--2932452	20	2.5	20	93	0	80	18	20	26	34	1.95
2932341--2932481	19	7.6	19	72	13	73	15	17	23	43	1.86
2932964--2933086	42	2.9	42	79	4	122	21	33	18	26	1.97
2934455--2934616	27	5.3	27	68	23	108	27	1	17	53	1.54
2934482--2934600	36	3.6	35	72	19	128	26	2	16	53	1.56
2934452--2934673	63	3.6	63	92	6	348	27	2	17	52	1.58
2934383--2934673	126	2.3	125	84	11	349	29	2	17	50	1.60
2934809--2934953	20	6.8	20	78	12	146	31	17	20	31	1.96
2934872--2934934	23	2.6	25	80	9	69	36	14	19	30	1.91
2934924--2935326	140	2.9	140	96	0	743	42	14	13	29	1.83
2937426--2937452	14	1.9	14	100	0	54	7	18	29	44	1.77
2937626--2937686	30	2.0	30	100	0	122	32	19	6	40	1.77
2937679--2937738	24	2.5	24	83	0	84	38	18	18	25	1.93
2938548--2938658	20	5.5	20	82	6	134	22	17	28	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2938642--2938680	20	2.0	20	89	0	60	23	20	17	38	1.93
2938551--2938678	61	2.1	61	84	4	143	23	17	25	33	1.96
2938725--2938779	20	2.8	20	75	5	58	25	14	29	30	1.95
2938753--2938800	19	2.5	19	86	3	60	20	14	27	37	1.92
2945828--2945856	14	2.1	14	100	0	58	65	6	20	6	1.40
2946888--2946927	18	2.3	18	86	4	55	5	27	7	60	1.45
2955204--2955241	17	2.2	18	90	9	62	68	5	5	21	1.29
2963710--2963755	21	2.2	21	88	0	65	30	2	17	50	1.58
2963716--2963764	21	2.4	21	93	3	82	30	2	18	48	1.59
2963727--2963768	10	4.1	10	81	6	57	30	0	23	45	1.53
2964334--2964377	23	1.9	23	90	0	70	38	4	0	56	1.20
2968645--2968793	63	2.3	64	94	2	264	31	10	4	53	1.56
2973335--2973763	215	2.0	213	97	2	808	29	18	17	35	1.93
2974740--2974784	19	2.4	19	81	3	56	35	0	0	64	0.94
2974763--2974819	28	2.2	25	81	9	60	42	0	1	56	1.10
2975177--2975224	21	2.3	21	85	7	62	22	22	27	27	1.99
2975217--2975283	20	3.3	20	80	12	75	20	22	22	34	1.97
2975511--2975570	22	2.7	22	87	5	77	63	6	6	23	1.43
2975830--2975881	16	3.1	17	78	13	63	36	0	3	59	1.16
2976154--2976199	19	2.4	19	85	3	56	21	17	30	30	1.96
2976165--2976201	19	1.9	19	94	0	65	21	16	29	32	1.95
2990122--2990158	2	18.5	2	94	0	65	45	0	2	51	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2993303--2993442	71	2.0	71	98	0	271	30	10	14	44	1.79
2994031--2994123	47	2.0	48	91	2	152	34	5	18	41	1.73
3006594--3006643	25	2.0	25	100	0	100	24	20	12	44	1.85
3010821--3010986	79	2.1	80	83	2	217	26	22	14	36	1.92
3011914--3011988	31	2.3	33	82	11	84	57	2	4	36	1.32
3011958--3012083	27	4.8	26	73	20	100	51	0	5	42	1.31
3011980--3012068	25	3.4	26	82	17	105	52	0	3	43	1.17
3016755--3016877	64	1.9	64	82	9	153	37	20	14	27	1.92
3029282--3029341	22	2.8	22	80	9	63	58	3	1	36	1.25
3029642--3029681	16	2.5	16	95	0	71	25	12	15	47	1.80
3036104--3036160	26	2.1	28	93	6	100	52	10	15	21	1.72
3051713--3051839	18	7.1	18	72	24	74	72	0	20	6	1.11
3051713--3051839	19	7.1	18	71	23	74	72	0	20	6	1.11
3051730--3051806	27	2.9	27	71	21	72	74	1	18	6	1.11
3051723--3051838	46	2.5	46	79	12	121	72	0	20	6	1.11
3052974--3053438	51	9.0	51	88	3	599	29	16	26	28	1.97
3052978--3053545	51	10.8	51	86	4	557	28	16	25	29	1.97
3053243--3053609	55	6.7	55	77	12	217	27	18	25	29	1.98
3056547--3056576	3	10.0	3	92	0	51	63	0	3	33	1.11
3066879--3066951	23	3.1	23	77	11	85	13	12	15	58	1.63
3068221--3068245	4	6.2	4	100	0	50	28	0	0	72	0.86
3069824--3069888	33	2.0	33	81	0	76	24	43	13	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3073489--3073614	46	2.8	45	90	3	200	39	7	23	30	1.81
3093132--3093231	31	3.2	33	84	8	138	46	15	7	32	1.72
3093224--3093265	20	2.1	20	95	0	75	45	7	14	33	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!