genome.fa.s8097.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008097.1 Hibiscus syriacus cultivar Beakdansim tig00110621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3094402

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275612--275653	3	14.0	3	100	0	84	33	0	0	66	0.92
279558--279602	22	2.0	23	86	4	65	42	2	4	51	1.34
279576--279622	14	3.4	14	77	19	53	48	2	2	46	1.25
279597--279656	15	3.7	16	74	23	54	48	5	1	45	1.34
287455--287480	2	13.0	2	100	0	52	50	0	0	50	1.00
288576--288622	13	3.6	13	77	8	51	65	0	0	34	0.93
288581--288625	14	3.1	15	78	12	58	64	0	0	35	0.94
288672--288718	20	2.3	21	78	10	62	63	8	2	25	1.34
290117--290226	3	37.0	3	87	1	159	63	0	2	33	1.09
290472--291479	114	8.9	113	92	1	1615	28	19	13	37	1.91
290472--291479	227	4.4	226	92	1	1615	28	19	13	37	1.91
290474--291461	341	2.9	341	97	0	1838	28	20	13	37	1.91
292110--292565	52	8.8	52	93	2	767	38	22	15	23	1.92
293749--293788	11	3.6	11	83	10	55	0	12	0	87	0.54
293722--293783	6	10.5	6	74	20	51	4	12	0	82	0.82
293749--293791	15	3.0	14	83	12	52	0	13	0	86	0.58
304901--304947	13	3.6	13	77	8	51	65	0	0	34	0.93
305001--305047	20	2.3	21	75	10	53	63	6	2	27	1.30
306444--306548	3	36.0	3	85	3	135	64	0	2	32	1.08
310915--310956	15	2.8	15	88	0	66	52	2	2	42	1.27
310978--311015	16	2.4	16	91	8	60	55	0	0	44	0.99
312793--312828	15	2.4	15	90	0	54	41	2	0	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322896--323008	53	2.1	54	90	6	174	46	22	14	17	1.84
327047--327080	16	2.1	16	88	0	50	26	0	2	70	1.01
327492--327544	24	2.2	24	96	0	97	33	9	3	52	1.52
328869--328901	16	2.1	16	88	11	50	39	12	0	48	1.40
329462--329561	29	3.4	29	97	0	182	13	24	41	22	1.88
337673--337706	15	2.2	15	89	5	50	70	5	0	23	1.09
340896--340944	18	2.7	19	84	12	59	32	4	6	57	1.42
344783--344831	23	2.1	23	88	0	71	44	4	6	44	1.47
347625--347975	176	2.0	178	98	1	679	33	16	16	33	1.92
353271--353305	14	2.4	15	90	9	63	31	0	0	68	0.90
354106--354164	30	2.0	30	86	0	82	32	25	23	18	1.97
354155--354206	19	2.7	19	87	0	77	25	26	30	17	1.97
355044--355195	76	2.0	76	100	0	304	32	10	15	40	1.82
372963--373325	175	2.1	175	91	2	586	41	2	8	46	1.48
373335--373368	9	3.7	9	92	4	50	29	8	11	50	1.69
377811--377894	42	2.0	41	86	4	116	41	13	9	35	1.76
379265--379310	23	2.0	23	82	0	56	26	4	0	69	1.07
381212--381428	82	2.6	82	91	3	328	31	25	23	19	1.98
385739--385799	23	2.6	24	82	7	72	32	13	13	40	1.82
392871--392926	24	2.2	25	81	6	60	17	10	17	53	1.72
402157--402216	21	2.8	20	76	20	59	23	3	3	70	1.18
404845--404871	7	3.9	7	100	0	54	29	14	11	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407500--407526	3	9.0	3	100	0	54	66	0	0	33	0.92
413062--413099	19	2.0	19	100	0	76	31	10	31	26	1.90
413900--413936	18	2.1	18	100	0	74	56	10	5	27	1.55
415800--415830	2	15.5	2	100	0	62	48	0	0	51	1.00
419827--419858	13	2.5	13	94	0	55	15	53	12	18	1.73
419974--420008	12	2.9	12	95	0	61	28	51	11	8	1.67
430654--430697	20	2.2	20	95	0	79	47	9	18	25	1.77
434551--434728	88	2.0	89	94	1	313	39	16	27	16	1.89
435691--435749	22	2.6	23	76	12	59	44	1	0	54	1.10
436590--436671	29	2.8	29	84	0	101	18	40	29	12	1.87
436752--436848	36	2.7	36	100	0	194	17	38	23	20	1.93
436927--437010	29	2.9	29	83	0	96	13	28	39	19	1.89
437915--437977	23	2.7	23	85	7	74	58	6	11	23	1.55
437911--437956	24	2.0	24	91	4	76	58	6	13	21	1.57
445112--445155	21	2.1	21	91	0	70	31	0	0	68	0.90
448279--448355	36	2.1	37	82	4	93	46	1	5	46	1.33
449373--449418	2	23.0	2	100	0	92	50	0	0	50	1.00
456662--456692	2	16.0	2	93	6	55	48	0	0	51	1.00
456692--456827	67	2.0	67	98	0	263	31	4	32	31	1.78
484092--484134	22	1.9	23	90	4	70	30	0	13	55	1.39
491765--491945	20	8.9	20	78	9	134	29	24	20	25	1.99
491814--491945	40	3.3	40	79	8	151	28	25	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491812--491945	60	2.2	60	84	2	180	29	25	22	23	1.99
492122--492164	22	2.0	22	86	9	61	27	39	13	18	1.89
492552--492604	20	2.7	20	85	2	72	13	15	20	50	1.76
494572--494618	20	2.5	19	89	6	69	14	19	27	38	1.91
495110--495163	21	2.6	21	100	0	108	25	29	20	24	1.99
496640--496701	14	4.3	14	77	6	61	38	0	14	46	1.45
496800--496853	20	2.7	20	79	0	54	46	25	14	12	1.81
496852--497132	20	14.4	20	84	6	344	28	20	20	30	1.98
497103--497372	140	1.9	140	96	0	504	42	15	12	29	1.84
499479--499515	14	2.6	14	91	4	56	5	21	21	51	1.68
499705--499758	24	2.2	24	90	0	81	42	20	16	20	1.89
500580--500637	20	2.9	20	92	0	89	27	20	25	25	1.99
500581--500647	20	3.4	19	85	8	80	28	19	23	28	1.98
510580--510623	22	2.0	22	81	0	52	52	15	4	27	1.63
512806--512848	3	15.0	3	80	9	54	65	0	4	30	1.13
512807--512860	17	3.2	16	82	12	65	66	0	5	27	1.13
512806--512848	20	2.2	20	86	0	59	65	0	4	30	1.13
512807--512874	9	8.2	8	75	16	59	69	1	4	25	1.16
513161--513273	40	2.8	40	78	11	104	23	20	34	21	1.97
513618--513714	36	2.7	36	80	10	110	43	12	14	29	1.82
514482--514544	29	2.1	30	91	2	101	41	14	7	36	1.75
514532--514634	52	2.0	53	96	1	190	34	18	14	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514630--514752	29	4.5	28	83	9	137	47	13	9	28	1.75
514645--514741	26	3.6	27	84	12	135	46	14	9	29	1.76
514987--515089	36	3.0	36	78	12	108	33	13	20	33	1.91
515030--515100	36	2.0	36	86	5	99	36	11	21	30	1.88
515057--515284	103	2.3	103	80	12	251	36	11	19	31	1.88
515757--515796	4	10.0	4	88	0	62	25	0	25	50	1.50
515760--515801	20	2.1	20	100	0	84	26	0	23	50	1.50
516798--516840	11	3.8	11	84	6	59	2	18	11	67	1.32
516791--516846	23	2.3	24	81	9	69	1	17	12	67	1.30
516810--516869	29	2.0	30	83	6	77	3	16	15	65	1.41
517430--517521	45	2.0	45	91	0	148	39	9	25	26	1.86
518825--518885	32	2.0	32	93	6	108	60	9	14	14	1.58
520349--520392	22	2.0	22	81	0	52	52	15	4	27	1.63
522577--522634	3	19.7	3	79	10	66	63	0	5	31	1.16
522578--522648	9	8.2	8	76	16	54	67	1	4	26	1.17
529594--529625	15	2.1	15	94	0	55	28	28	0	43	1.55
529835--530119	41	7.0	41	85	0	327	31	17	23	27	1.97
530066--530262	82	2.4	82	87	1	279	34	19	18	26	1.96
529820--530300	41	11.7	41	79	3	240	33	18	20	27	1.96
530066--530313	82	3.0	82	81	4	277	35	19	16	28	1.93
535903--535936	14	2.4	14	90	0	50	64	0	14	20	1.28
536769--536853	32	2.7	30	75	20	84	27	30	29	12	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544082--544126	19	2.4	19	88	0	63	35	2	13	48	1.54
547723--547781	31	1.9	31	100	0	118	25	23	16	33	1.96
550039--550128	34	2.6	34	91	0	144	24	22	30	23	1.99
551211--551271	27	2.2	28	91	2	97	21	11	22	44	1.84
551221--551281	27	2.3	27	79	0	68	26	14	16	42	1.87
553632--553716	37	2.3	37	86	6	120	43	20	3	32	1.68
556439--556485	19	2.6	17	83	10	58	25	29	17	27	1.97
556436--556599	65	2.5	65	85	2	224	30	25	15	28	1.96
563729--563768	20	2.0	21	85	14	57	42	5	7	45	1.54
564133--564169	19	1.9	19	88	0	56	21	27	24	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12