genome.fa.s8097.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008097.1 Hibiscus syriacus cultivar Beakdansim tig00110621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3094402

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1389 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1672291--1672318	2	14.0	2	100	0	56	50	0	0	50	1.00
1675854--1675886	17	1.9	17	93	0	57	54	12	9	24	1.66
1679650--1679763	26	4.4	26	98	0	210	33	24	24	17	1.96
1688302--1689155	182	4.7	182	88	2	1182	40	14	16	28	1.87
1691390--1691425	18	2.1	18	89	5	56	36	8	47	8	1.64
1691446--1691968	198	2.7	198	83	6	643	38	13	16	32	1.87
1692016--1692176	86	1.9	85	98	1	313	32	14	12	40	1.84
1698000--1698051	20	2.6	20	81	6	61	42	28	17	11	1.84
1698038--1698191	20	7.7	20	85	5	213	32	28	19	19	1.96
1698000--1698191	40	4.8	40	82	6	194	34	28	18	17	1.94
1698000--1698191	60	3.2	60	80	5	210	34	28	18	17	1.94
1698565--1698621	14	3.7	14	70	20	51	8	26	21	43	1.81
1698558--1698622	33	2.0	33	96	0	121	9	26	20	44	1.81
1699795--1699834	20	2.0	20	90	0	62	22	27	7	42	1.80
1700199--1700684	179	2.7	177	82	6	548	42	12	16	27	1.85
1700656--1700704	20	2.5	20	89	0	80	46	4	14	34	1.63
1702653--1702707	24	2.5	22	77	16	60	40	0	9	50	1.34
1703363--1703401	18	2.2	18	100	0	78	56	0	38	5	1.22
1703703--1703738	17	2.1	17	89	0	54	47	8	8	36	1.64
1704083--1704112	15	2.0	15	93	0	51	23	6	43	26	1.78
1705191--1706118	198	4.6	198	92	2	1468	37	15	15	31	1.90
1706604--1706655	15	3.5	15	87	10	79	23	44	0	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1709953--1711275	200	6.5	200	86	6	1708	40	15	13	30	1.86
1710679--1710724	21	2.1	21	84	4	56	30	15	10	43	1.81
1710759--1710810	21	2.5	21	96	0	95	38	13	15	32	1.86
1710559--1711210	221	3.0	221	86	5	864	41	14	12	30	1.84
1709953--1711343	621	2.3	604	86	5	1864	39	15	13	31	1.86
1709969--1711275	421	3.2	407	86	6	1668	40	15	13	30	1.86
1714960--1715118	87	1.8	86	91	1	264	30	12	11	44	1.79
1726384--1726453	20	3.5	20	98	0	131	21	18	10	50	1.76
1727090--1727135	16	2.8	17	83	6	58	60	0	2	36	1.09
1739243--1739294	21	2.5	21	81	3	61	38	21	23	17	1.93
1739283--1739396	20	5.7	20	83	6	113	31	25	18	24	1.97
1739262--1739396	61	2.2	61	82	2	164	32	25	19	22	1.97
1739910--1739976	19	3.5	19	81	2	80	49	23	16	10	1.77
1739972--1740088	19	6.7	18	84	13	140	9	20	23	47	1.79
1740026--1740070	13	3.2	13	90	9	63	6	20	26	46	1.75
1740042--1740155	33	3.5	32	87	4	149	10	22	26	40	1.86
1739988--1740155	66	2.5	66	85	4	205	10	21	25	43	1.83
1740126--1740183	20	2.9	20	80	10	64	13	24	18	43	1.87
1742238--1742304	21	3.2	21	66	6	55	23	35	20	19	1.95
1742182--1742304	42	2.9	42	80	4	106	22	35	17	23	1.95
1743664--1743699	14	2.6	14	95	0	63	30	0	25	44	1.54
1743926--1743950	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1744125--1744178	24	2.2	24	90	0	81	38	20	16	24	1.92
1745112--1745149	20	1.9	20	88	0	58	36	23	23	15	1.94
1745172--1745245	19	4.5	16	83	16	66	13	20	18	47	1.82
1745168--1745235	19	3.8	19	87	12	101	13	22	17	47	1.82
1745230--1745267	20	1.9	20	94	0	67	15	21	23	39	1.92
1745353--1745389	14	2.6	14	86	0	56	48	21	0	29	1.50
1747248--1747314	19	3.5	19	83	4	89	37	23	23	14	1.93
1747303--1747360	14	3.9	14	79	16	71	48	25	17	8	1.75
1747287--1747365	32	2.4	33	95	2	142	46	24	18	10	1.80
1747372--1747436	18	3.8	19	73	24	72	12	20	20	47	1.81
1747393--1747449	14	3.8	14	78	17	60	10	17	24	47	1.79
1747383--1747462	32	2.5	32	93	2	135	11	20	22	46	1.82
1747458--1747502	20	2.3	20	84	3	56	13	22	26	37	1.91
1747982--1748026	18	2.5	18	88	0	72	13	15	44	26	1.83
1749866--1749959	20	4.7	20	80	2	89	23	18	24	34	1.96
1749846--1749960	20	5.7	20	78	5	88	23	17	23	35	1.95
1749949--1750041	20	4.5	21	78	4	100	17	24	18	39	1.91
1749888--1750022	41	3.3	41	82	4	139	19	21	20	38	1.94
1749949--1750041	41	2.3	41	100	0	186	17	24	18	39	1.91
1750390--1750425	16	2.2	17	90	5	56	41	0	8	50	1.33
1750455--1750487	16	1.9	18	88	11	52	27	3	6	63	1.32
1750940--1751184	129	1.9	127	91	2	391	35	13	15	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1751581--1751656	35	2.2	35	95	0	134	36	1	22	39	1.63
1767332--1767389	24	2.4	24	80	5	64	44	0	1	53	1.10
1767329--1767389	30	2.0	30	90	0	95	47	0	1	50	1.10
1767334--1767413	30	2.6	30	80	6	79	48	1	3	46	1.28
1773850--1773907	28	2.1	28	83	6	73	24	10	1	63	1.35
1775572--1775633	28	2.2	28	86	11	83	25	0	19	54	1.44
1775600--1775664	31	2.1	32	82	2	78	26	1	12	60	1.41
1778462--1778506	21	2.2	21	88	4	65	42	8	8	40	1.67
1797922--1797952	2	15.5	2	93	0	53	45	0	0	54	0.99
1797918--1797950	10	3.3	10	95	0	57	42	0	0	57	0.98
1811657--1811791	42	3.2	43	79	8	143	28	19	25	27	1.99
1811657--1811879	42	5.3	41	74	9	139	24	19	23	32	1.97
1812225--1812333	21	5.2	21	76	6	69	1	38	18	41	1.61
1812639--1812676	20	1.9	19	85	15	51	52	7	15	23	1.69
1815670--1815726	26	2.1	27	96	3	107	26	0	7	66	1.17
1816547--1816610	31	2.2	28	84	15	85	65	4	0	29	1.13
1818255--1818289	15	2.3	15	90	0	52	54	5	2	37	1.39
1823945--1823988	18	2.4	18	96	0	79	36	13	29	20	1.91
1826589--1826630	20	2.0	21	86	4	59	57	0	4	38	1.20
1827495--1827557	2	32.0	2	96	3	119	49	0	0	50	1.00
1828005--1828137	66	2.0	67	97	1	250	25	18	19	36	1.95
1835715--1835785	18	3.7	18	71	14	70	19	22	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1841040--1841086	2	24.0	2	95	4	87	51	0	0	48	1.00
1842485--1842544	22	2.7	22	97	0	111	15	25	33	26	1.95
1842452--1842556	22	5.3	18	83	10	93	16	21	31	30	1.95
1842529--1842563	18	1.9	18	88	0	52	22	20	31	25	1.98
1846260--1846352	24	3.9	24	88	2	125	18	16	18	47	1.83
1846246--1846347	48	2.1	48	83	7	127	17	17	17	47	1.84
1846287--1846352	7	11.0	6	72	27	52	15	16	18	50	1.79
1846246--1846366	36	3.4	36	74	11	95	17	15	17	49	1.80
1846265--1846359	12	7.9	12	73	13	70	16	15	17	49	1.80
1848375--1848405	15	2.1	15	100	0	62	48	0	0	51	1.00
1848470--1848547	35	2.5	30	83	12	86	33	25	3	37	1.74
1848488--1848568	35	2.3	35	95	4	146	39	30	3	25	1.73
1848599--1848636	20	1.9	20	88	0	58	21	26	10	42	1.85
1849394--1849450	27	2.1	26	81	12	62	49	8	5	36	1.57
1854462--1854529	35	1.9	35	93	0	118	44	20	0	35	1.52
1854531--1854608	35	2.2	34	86	6	111	41	1	15	42	1.55
1869402--1869463	3	20.3	3	86	3	88	59	0	3	37	1.13
1869414--1869463	18	2.8	18	100	0	100	62	0	4	34	1.14
1869802--1870467	114	5.8	115	93	1	961	29	19	12	38	1.89
1871205--1871431	83	2.7	83	97	0	427	37	22	13	26	1.92
1872194--1872230	19	2.0	19	89	5	58	54	8	5	32	1.53
1883196--1883233	15	2.8	13	88	11	51	68	2	5	23	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1885384--1885460	3	25.7	3	94	0	118	61	0	3	35	1.15
1886845--1886873	15	1.9	15	100	0	58	48	20	6	24	1.74
1887000--1887385	182	2.1	184	91	3	638	42	3	8	45	1.49
1889609--1889646	19	2.0	20	90	10	62	42	10	10	36	1.74
1894747--1894798	27	2.0	26	88	3	77	34	13	19	32	1.90
1896169--1896241	32	2.3	31	79	6	76	38	9	10	41	1.73
1896265--1896297	2	16.5	2	100	0	66	51	0	0	48	1.00
1896356--1896412	15	3.9	15	76	15	57	63	1	1	33	1.15
1905117--1905317	105	1.9	104	93	1	348	53	14	13	17	1.73
1906942--1906988	20	2.4	19	79	10	58	51	10	19	19	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12