genome.fa.s8103.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1996589

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1889873--1890228	37	9.5	37	76	9	269	24	17	23	35	1.95
1890115--1890219	36	2.9	36	87	2	149	20	22	20	35	1.96
1890375--1890410	18	2.0	18	94	0	63	27	25	5	41	1.77
1898594--1898823	20	11.5	20	86	1	246	37	25	17	19	1.94
1899504--1899548	23	2.0	23	86	8	65	26	15	22	35	1.94
1902065--1902215	19	8.4	19	81	16	196	13	23	17	45	1.84
1902046--1902215	53	3.2	53	99	0	333	13	24	17	44	1.85
1902046--1902197	33	4.4	34	74	19	145	13	24	17	44	1.84
1902274--1902431	33	4.7	33	75	16	164	44	18	22	15	1.86
1902274--1902437	19	9.6	19	73	22	150	43	18	22	15	1.88
1902444--1902541	18	5.5	18	83	14	132	15	23	17	43	1.87
1902427--1902541	52	2.2	52	95	1	205	14	25	17	42	1.87
1902648--1902684	14	2.6	14	91	0	65	45	21	0	32	1.52
1902750--1902785	12	3.0	12	83	0	54	63	16	0	19	1.30
1904591--1904657	20	3.4	20	84	10	84	46	26	16	10	1.79
1904648--1904704	14	3.7	14	77	20	60	45	22	21	10	1.82
1904628--1904721	33	2.8	33	93	1	161	47	21	20	10	1.79
1904591--1904726	19	7.6	19	75	17	121	46	23	19	11	1.81
1904722--1904816	19	5.3	19	79	15	112	8	15	30	45	1.76
1904860--1905327	92	5.1	93	94	3	808	45	18	13	22	1.84
1909528--1909566	20	1.9	21	94	5	71	53	2	0	43	1.14
1909863--1909902	20	2.0	20	100	0	80	50	10	0	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1920331--1920357	3	9.0	3	100	0	54	66	0	0	33	0.92
1921909--1922035	35	3.6	35	70	11	98	37	15	18	28	1.91
1921909--1922049	36	4.0	36	76	9	130	37	17	18	26	1.93
1923776--1923844	21	3.3	21	97	0	129	39	10	13	37	1.78
1924563--1924614	15	3.2	16	80	17	63	38	11	21	28	1.88
1924775--1924830	24	2.4	24	87	3	78	16	23	25	35	1.94
1928349--1928437	32	2.9	29	81	9	97	26	14	21	37	1.92
1928361--1928437	30	2.5	31	85	4	102	28	14	23	33	1.94
1931251--1931291	17	2.4	17	91	0	64	46	4	24	24	1.72
1932696--1932784	32	2.9	30	81	3	97	26	19	17	35	1.94
1932696--1932774	32	2.5	31	83	4	106	24	21	17	36	1.94
1933116--1933333	4	54.5	4	98	0	418	26	0	23	50	1.50
1937732--1937826	31	3.1	31	92	0	145	35	11	15	36	1.84
1938625--1938672	23	2.0	24	96	4	89	22	16	25	35	1.95
1939769--1939807	2	19.5	2	100	0	78	48	0	0	51	1.00
1940802--1940856	3	18.3	3	96	0	92	29	0	3	67	1.08
1945878--1945926	19	2.7	17	84	9	53	26	20	28	24	1.99
1945898--1946057	65	2.5	65	84	5	191	26	18	23	31	1.98
1948969--1949109	55	2.6	55	85	1	176	26	17	23	32	1.96
1949593--1949825	49	4.9	51	68	17	117	39	1	9	49	1.46
1949560--1949830	139	1.9	138	89	4	420	39	2	9	48	1.48
1949722--1949825	49	2.1	50	87	3	149	36	0	9	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1955681--1955760	31	2.6	30	73	15	74	37	5	10	47	1.59
1958642--1958675	2	17.0	2	100	0	68	50	0	0	50	1.00
1959152--1959227	21	3.8	21	79	6	86	28	22	25	23	1.99
1959192--1959226	18	1.9	18	88	0	52	28	20	28	22	1.98
1972701--1972733	12	2.8	12	90	0	57	24	15	0	60	1.35
1974699--1974728	15	2.0	15	93	0	51	20	23	23	33	1.97
1982610--1982650	2	20.5	2	100	0	82	48	0	0	51	1.00
1983400--1983848	229	2.0	227	93	1	765	45	7	7	40	1.60
1983914--1983959	20	2.3	19	89	10	74	54	10	17	17	1.70
1984084--1984125	20	2.1	20	100	0	84	61	9	14	14	1.55
1984081--1984130	20	2.7	18	85	14	75	56	8	18	18	1.65
1986354--1986418	21	3.1	21	80	6	69	40	15	29	15	1.88
1986452--1986516	33	2.0	33	90	3	105	29	0	47	23	1.52
1988297--1988344	19	2.6	19	93	3	80	31	2	10	56	1.45
1988463--1989823	197	6.9	198	97	1	2585	36	16	16	30	1.91
1991287--1991361	3	25.0	3	79	0	78	34	5	34	25	1.79
1992551--1993052	180	2.8	181	92	4	813	36	14	16	33	1.88
1993050--1993092	22	1.9	23	85	4	61	30	11	11	46	1.76
1996196--1996240	23	2.0	23	86	8	65	33	2	22	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!