genome.fa.s8103.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1996589

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865645--865678	11	3.0	11	91	4	50	32	0	0	67	0.91
870467--870500	2	17.0	2	100	0	68	50	0	0	50	1.00
873523--873565	20	2.2	20	91	0	68	23	32	18	25	1.97
876590--876631	14	2.9	15	78	7	59	42	7	19	30	1.78
876632--876674	14	3.1	14	82	0	50	37	9	18	34	1.83
876867--876936	32	2.3	30	79	15	81	44	0	2	52	1.15
876977--877027	23	2.2	23	82	0	57	45	1	1	50	1.24
877023--877164	25	5.3	25	68	20	67	50	2	0	46	1.18
877125--877183	31	1.9	32	86	13	88	54	0	0	45	0.99
877132--877175	22	2.0	23	86	4	63	54	0	0	45	0.99
877125--877190	31	2.2	31	82	17	86	51	0	0	48	1.00
877368--877481	42	2.7	42	94	0	192	48	20	16	14	1.81
884583--884627	20	2.1	22	80	12	58	53	2	2	42	1.25
884614--884644	15	2.1	15	100	0	62	67	0	0	32	0.91
886953--887020	28	2.4	29	76	20	72	58	2	1	36	1.22
886951--887010	26	2.3	27	81	16	72	60	3	0	36	1.14
888823--888895	3	24.7	3	89	8	114	65	1	0	32	1.01
889246--889434	94	2.0	93	89	1	288	30	18	15	35	1.92
889339--889967	113	5.6	114	92	1	873	27	19	15	37	1.92
890328--890400	22	3.3	21	83	7	92	38	15	12	34	1.84
890340--890407	22	3.1	22	91	0	109	39	11	16	32	1.84
895152--895228	15	4.9	15	78	6	64	3	24	0	71	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
895163--895226	24	2.6	24	78	11	67	4	21	0	73	1.01
895156--895228	16	4.7	15	79	11	58	4	21	0	73	0.99
895157--895254	7	12.3	7	70	23	61	4	19	3	73	1.13
895213--895265	26	2.0	26	100	0	106	3	15	11	69	1.31
897538--897603	12	5.3	13	75	13	50	66	4	7	21	1.35
899210--899267	28	2.2	26	81	6	62	62	1	3	32	1.22
901724--901778	3	18.7	3	85	10	78	65	1	0	32	1.03
911370--911394	2	12.5	2	100	0	50	52	0	0	48	1.00
911233--911382	71	2.1	71	93	0	255	51	10	10	27	1.69
911370--911419	14	3.8	13	82	12	50	52	4	0	44	1.20
917428--917583	15	10.4	15	70	18	76	73	0	22	3	0.99
917458--917586	9	14.1	9	68	21	65	75	0	21	3	0.94
917419--917583	22	7.3	22	74	22	94	74	0	21	4	0.98
917450--917564	12	10.1	12	73	21	72	75	0	21	2	0.92
917450--917581	32	4.2	30	77	18	110	75	0	21	3	0.94
917452--917586	30	4.5	31	78	15	117	75	0	21	2	0.93
917452--917586	44	3.1	43	80	10	123	75	0	21	2	0.93
917487--917580	46	2.0	46	84	8	120	76	0	20	3	0.92
917458--917586	59	2.1	61	81	16	144	75	0	21	3	0.94
920692--921430	134	5.5	135	81	4	755	33	21	15	28	1.94
920692--921441	268	2.8	268	83	2	878	34	21	15	28	1.94
923650--923686	19	1.9	19	88	0	56	35	16	8	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925889--925916	14	2.0	14	100	0	56	35	0	0	64	0.94
941035--941060	13	2.0	13	100	0	52	0	7	7	84	0.77
942703--942772	2	35.5	2	97	2	133	50	0	0	50	1.00
946101--946140	20	2.0	20	100	0	80	60	0	10	30	1.30
949000--949041	15	2.7	15	88	3	57	57	11	21	9	1.63
950063--950114	18	2.9	18	94	0	95	30	17	5	46	1.71
952886--953023	46	2.9	48	79	10	174	52	9	36	0	1.39
955494--955551	2	29.5	2	94	3	100	53	0	0	46	1.00
956214--956247	17	2.0	17	100	0	68	52	0	0	47	1.00
956212--956251	19	2.1	19	100	0	80	52	0	0	47	1.00
956212--956249	2	19.5	2	94	5	69	52	0	0	47	1.00
956436--956467	2	16.0	2	100	0	64	50	0	0	50	1.00
956907--956969	27	2.4	25	80	15	74	30	1	4	63	1.24
959283--959312	15	2.0	15	100	0	60	26	33	6	33	1.83
962756--962794	2	19.5	2	84	10	53	46	5	0	48	1.24
962843--962892	26	1.9	26	83	0	64	50	0	14	36	1.43
962956--962988	5	6.8	5	86	6	50	57	0	0	42	0.98
964761--964797	19	2.0	19	94	5	67	37	40	10	10	1.75
969919--970021	42	2.5	41	82	4	118	30	23	15	31	1.95
969893--970261	177	2.1	176	89	1	549	29	18	17	34	1.94
970098--970198	42	2.4	42	86	4	134	24	19	21	33	1.97
970063--970651	238	2.5	238	90	1	887	30	17	16	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970581--970693	42	2.7	42	86	5	149	30	18	17	32	1.94
971053--971790	130	5.6	131	82	5	789	29	20	18	31	1.96
971049--971804	259	2.9	256	83	6	826	30	21	17	31	1.96
971951--971980	15	2.1	14	93	6	51	76	0	0	23	0.78
976978--977037	7	8.6	7	75	14	52	38	1	13	46	1.53
976985--977037	21	2.5	21	84	6	63	39	1	13	45	1.54
977967--978130	60	2.8	61	80	11	191	37	2	24	35	1.69
978730--978776	15	3.0	16	77	22	55	72	0	8	19	1.10
978974--979002	2	14.5	2	100	0	58	51	0	0	48	1.00
981577--981624	23	2.2	21	88	7	69	18	14	16	50	1.79
992818--992916	4	25.5	4	72	20	61	74	1	7	17	1.09
993018--993062	12	3.8	12	82	11	56	60	2	0	37	1.09
994342--994384	2	21.5	2	100	0	86	48	0	0	51	1.00
996675--996836	60	2.7	59	84	4	202	32	22	6	38	1.79
996981--997144	59	2.8	58	85	5	204	43	6	18	31	1.75
1003414--1003448	16	2.1	18	89	10	56	45	8	0	45	1.34
1005391--1005431	21	2.0	21	85	0	55	29	29	24	17	1.97
1005970--1006285	150	2.1	150	96	1	582	26	18	21	34	1.96
1012339--1012381	21	2.0	21	86	0	59	30	27	25	16	1.97
1012709--1012743	18	1.9	18	88	11	54	34	8	20	37	1.83
1012920--1013235	150	2.1	150	95	1	564	26	17	21	34	1.95
1014477--1014665	36	5.2	36	84	0	225	20	24	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014458--1014667	72	2.9	71	83	4	253	21	24	21	32	1.98
1016774--1016834	18	3.2	20	68	17	67	24	26	9	39	1.86
1016762--1016834	36	2.0	36	97	0	137	26	27	10	35	1.90
1026053--1026117	13	5.0	13	81	7	69	36	15	18	29	1.91
1025930--1026083	83	1.9	82	84	2	202	28	17	20	33	1.96
1026053--1026117	26	2.5	26	80	5	78	36	15	18	29	1.91
1026294--1026389	21	4.6	21	72	0	75	40	21	13	23	1.89
1028121--1028200	27	3.0	27	84	0	88	31	33	1	33	1.66
1029021--1029275	45	5.7	45	90	0	341	28	21	10	39	1.87
1029200--1029442	79	3.1	78	87	1	342	27	22	9	39	1.86
1029321--1029388	34	2.0	34	85	5	93	29	20	8	41	1.82
1029857--1029899	22	1.9	23	90	4	70	25	25	16	32	1.96
1029889--1030044	71	2.2	71	80	12	176	30	25	14	28	1.95
1048148--1048403	45	5.7	45	84	0	280	29	20	10	39	1.86
1048341--1048491	79	1.9	79	93	0	257	29	25	8	36	1.86
1050520--1050558	16	2.4	16	91	8	62	17	5	0	76	0.96
1055574--1055701	63	2.0	63	89	0	193	28	18	18	34	1.95
1058644--1058856	118	1.8	118	86	2	311	41	20	11	26	1.86
1060759--1060813	24	2.3	24	100	0	110	47	18	14	20	1.83
1061896--1061939	19	2.3	19	96	0	79	38	20	2	38	1.65
1064977--1065751	68	11.4	68	91	0	1210	29	24	15	31	1.95
1066107--1066267	59	2.7	59	93	3	272	37	18	9	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067518--1067553	18	2.0	18	100	0	72	33	33	0	33	1.58
1068848--1069008	65	2.5	64	79	3	171	31	21	16	30	1.95
1070955--1070994	21	1.9	21	89	0	62	55	7	7	30	1.56
1077641--1077689	19	2.6	19	84	9	57	24	28	20	26	1.99
1077510--1077689	65	2.8	64	73	13	154	30	22	18	28	1.97
1079086--1079151	20	3.2	20	64	31	50	25	22	4	46	1.70
1079046--1079238	41	4.7	43	79	15	203	25	21	4	48	1.68
1079029--1079250	82	2.7	82	80	10	238	26	22	4	46	1.71
1079292--1079513	66	3.5	64	76	10	226	27	24	16	31	1.96
1079863--1080065	59	3.5	59	90	0	309	37	18	9	34	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11