genome.fa.s8103.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1996589

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  1  of  11  ( 1263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1864--1918	21	2.6	21	91	5	85	25	16	21	36	1.94
9817--9888	24	3.0	24	69	18	69	27	22	27	22	1.99
9815--9893	23	3.4	23	71	22	74	29	24	26	20	1.99
16084--16195	57	2.0	57	96	0	206	28	16	20	33	1.95
18752--18778	5	5.4	5	100	0	54	0	18	37	44	1.50
19624--19691	33	2.0	34	97	2	129	26	17	16	39	1.90
22741--22808	33	2.0	34	94	2	120	27	17	14	39	1.89
23077--23114	16	2.4	16	100	0	76	36	0	26	36	1.57
24464--24799	45	7.5	45	90	0	519	39	17	18	24	1.92
30580--30912	45	7.4	45	91	0	540	39	16	20	23	1.92
44474--44516	16	2.7	16	72	13	52	67	0	0	32	0.91
44689--44720	7	4.6	7	92	0	55	53	43	0	3	1.16
47489--47530	22	2.0	20	90	9	66	52	14	7	26	1.67
47704--47785	21	4.0	20	73	12	76	24	25	18	31	1.97
47775--47826	21	2.5	21	81	3	61	40	17	21	21	1.91
47764--47923	41	3.9	40	67	11	101	31	20	16	30	1.95
47836--47902	21	3.2	21	78	4	73	22	22	16	38	1.92
47898--47985	21	4.3	21	89	2	117	40	19	20	19	1.91
47898--47985	41	2.1	41	85	4	115	40	19	20	19	1.91
47753--47984	123	1.9	122	81	5	279	32	20	18	28	1.96
48559--48602	18	2.4	18	88	3	61	45	27	18	9	1.79
48620--48741	14	7.6	14	69	24	64	9	22	22	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48607--48790	33	5.4	33	90	5	251	11	22	20	45	1.83
50915--50981	21	3.2	21	64	6	55	25	35	19	19	1.95
50893--50981	42	2.1	42	83	8	110	24	35	19	20	1.95
52330--52365	14	2.6	14	95	0	63	30	0	25	44	1.54
52472--52563	19	5.4	19	71	24	96	45	18	20	15	1.85
52472--52597	33	3.8	33	91	2	182	46	20	19	13	1.83
52568--52608	19	2.2	19	90	0	64	56	21	12	9	1.65
52615--52706	33	2.8	33	91	0	148	13	22	17	46	1.82
52648--52706	19	3.4	19	68	22	56	15	22	16	45	1.84
52700--52772	20	3.6	20	68	17	60	24	16	24	34	1.95
55033--55057	12	2.1	12	100	0	50	0	28	0	72	0.86
55233--55286	24	2.2	24	90	0	81	40	20	16	22	1.91
56066--56114	21	2.4	21	79	3	55	42	16	20	20	1.89
56103--56181	20	3.9	20	75	9	61	36	22	17	22	1.95
56390--56419	14	2.1	14	93	0	51	36	23	30	10	1.87
56404--56491	20	4.4	20	77	5	97	37	22	22	17	1.94
56523--56576	14	3.5	14	77	22	63	11	20	20	48	1.80
56505--56575	33	2.2	33	84	0	88	19	19	21	39	1.93
58150--58241	42	2.2	42	86	1	132	21	15	41	21	1.90
58580--58652	20	3.7	20	90	0	83	36	26	13	23	1.92
58586--58671	40	2.2	40	82	0	100	37	25	18	18	1.94
58606--58678	20	3.7	20	90	0	110	38	24	21	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58718--58834	19	6.6	19	67	19	74	14	21	20	43	1.87
58740--58798	14	3.9	14	72	20	55	11	16	22	49	1.78
58723--58814	33	2.8	33	91	0	148	13	18	20	47	1.81
59394--59441	18	2.7	18	90	0	78	16	12	43	27	1.84
60760--60802	20	2.2	20	95	0	77	53	18	18	9	1.70
61073--61122	22	2.4	21	81	15	59	22	12	42	24	1.87
61081--61124	22	2.0	22	91	8	72	18	13	45	22	1.84
61317--61383	20	3.3	20	85	0	89	28	14	29	26	1.96
61378--61486	21	5.3	21	82	7	134	22	22	17	37	1.94
61358--61487	62	2.1	61	88	1	197	23	22	19	34	1.96
61392--61486	41	2.3	39	86	10	136	23	22	17	36	1.95
61378--61501	62	2.0	62	84	3	160	25	21	18	34	1.96
61476--61528	21	2.5	22	78	6	65	33	20	26	18	1.96
63497--63548	20	2.6	20	100	0	104	42	17	11	28	1.84
65674--65800	48	2.8	46	83	8	152	31	22	7	37	1.83
73852--73883	14	2.3	14	100	0	64	6	15	28	50	1.68
73853--73903	24	2.1	24	85	0	66	11	11	21	54	1.68
74872--74948	16	4.8	16	95	0	136	7	11	23	57	1.60
74900--74952	10	6.1	10	68	31	50	7	11	22	58	1.57
75018--75050	16	2.1	16	100	0	66	6	12	24	57	1.57
75558--75919	178	2.0	179	92	1	611	38	17	15	28	1.90
75623--76190	178	3.1	176	78	14	506	38	17	13	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75530--76289	377	2.0	382	84	6	1001	38	16	13	31	1.88
75735--76340	200	3.0	200	88	0	847	38	17	13	31	1.88
76759--76800	18	2.3	18	88	8	59	26	38	2	33	1.69
78873--78902	15	2.0	15	93	0	51	30	6	13	50	1.67
79223--79286	6	10.7	6	85	6	76	31	10	6	51	1.62
79223--79286	18	3.6	18	82	6	85	31	10	6	51	1.62
79223--79286	30	2.1	30	91	5	103	31	10	6	51	1.62
80837--80883	20	2.3	21	85	3	69	27	21	8	42	1.81
81235--81283	20	2.5	20	96	0	89	46	12	14	26	1.79
81248--81292	20	2.2	20	88	0	63	51	11	8	28	1.68
83257--86030	226	12.4	226	84	2	3476	32	15	13	38	1.87
83784--84607	108	7.5	108	69	12	512	32	15	14	37	1.88
83257--86030	451	6.2	453	85	3	3476	32	15	13	38	1.87
83257--86030	677	4.1	677	85	3	3442	32	15	13	38	1.87
85330--85974	108	5.8	108	68	14	321	31	14	13	39	1.86
87830--88123	46	6.4	46	87	0	417	24	21	11	42	1.85
93801--94092	46	6.3	46	88	0	422	23	19	13	43	1.86
97032--97114	24	3.5	23	81	1	76	44	18	13	24	1.85
99460--99505	20	2.3	19	85	14	58	50	8	15	26	1.73
109664--109709	20	2.3	19	85	14	58	50	8	15	26	1.73
112672--112711	21	1.9	21	94	0	71	30	2	10	57	1.45
114015--114124	44	2.5	44	93	0	184	38	13	7	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115161--115268	31	3.5	31	68	18	82	39	4	22	33	1.74
115127--115251	60	2.1	61	87	3	182	39	4	21	35	1.72
115138--115287	60	2.5	59	80	9	160	42	4	20	34	1.70
116066--116130	16	4.5	15	70	18	57	53	1	4	40	1.31
117769--117827	3	20.7	3	75	6	52	28	3	1	66	1.18
123079--123129	25	2.0	25	92	0	84	25	35	11	27	1.91
128941--129019	22	3.9	21	73	20	78	81	0	12	6	0.88
128941--129019	9	9.1	8	81	12	68	81	0	12	6	0.88
130589--130637	3	16.7	3	78	4	55	26	4	0	69	1.06
131147--131376	18	13.0	18	71	18	146	43	6	7	41	1.59
131252--131312	25	2.5	24	79	7	70	47	6	3	42	1.45
131376--131409	17	1.9	18	94	5	61	38	11	8	41	1.73
131392--131477	24	3.8	23	69	20	74	43	6	8	41	1.61
131300--131451	42	3.8	39	79	14	143	42	7	7	41	1.63
131431--131492	24	2.6	25	82	12	76	40	6	9	43	1.63
131481--131632	65	2.3	63	82	6	196	40	7	5	46	1.54
131545--131673	7	19.7	7	72	15	55	43	3	4	48	1.42
131545--131653	20	5.2	20	70	15	60	42	3	5	48	1.44
131550--131673	27	4.7	28	76	16	81	43	4	4	47	1.43
131602--131649	15	3.4	15	73	26	59	35	2	12	50	1.52
131745--131799	18	2.8	18	83	10	56	40	9	5	45	1.59
131804--131883	32	2.5	31	82	6	81	47	7	7	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131810--131934	50	2.5	50	89	1	178	44	7	7	40	1.59
131876--131998	33	3.7	33	93	2	201	42	8	6	43	1.60
132283--132491	103	2.1	100	84	4	267	33	29	4	32	1.78
132466--132503	20	1.9	20	88	0	58	15	31	7	44	1.75
132791--132944	6	25.8	6	72	3	87	43	40	10	5	1.61
132791--132931	30	4.8	29	76	12	108	43	39	10	5	1.63
132847--132918	36	2.0	36	88	0	108	43	43	8	5	1.58
132949--133000	18	2.9	18	70	0	50	44	28	7	19	1.78
135424--135472	20	2.5	20	86	0	71	10	8	18	63	1.50
135557--135600	18	2.4	18	96	0	79	20	15	20	43	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11