genome.fa.s8103.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1996589

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135594--135671	23	3.4	23	90	0	120	24	12	28	34	1.92
136250--136295	14	3.2	14	82	17	51	58	0	4	36	1.18
136507--136542	16	2.2	16	90	0	54	36	16	27	19	1.93
136840--136868	11	2.5	12	88	11	51	17	0	6	75	1.01
146168--146206	21	1.9	20	89	5	60	35	23	15	25	1.94
157231--157281	26	1.9	27	96	4	95	70	3	3	21	1.20
157326--157368	10	4.5	10	82	11	54	23	4	0	72	1.04
157335--157433	26	3.9	25	70	16	87	28	5	1	65	1.20
158970--159011	17	2.5	17	84	0	57	54	19	2	23	1.55
162123--162187	28	2.3	28	86	0	85	30	13	26	29	1.94
162123--162187	14	4.6	14	79	7	69	30	13	26	29	1.94
164967--164997	16	2.0	16	93	6	55	54	6	6	32	1.51
167747--167773	13	2.1	13	100	0	54	48	7	0	44	1.31
168726--168782	18	2.9	22	76	23	56	42	0	0	57	0.98
169053--169091	18	2.2	18	86	4	53	17	23	25	33	1.96
170981--171097	59	2.0	59	82	0	144	44	4	19	31	1.70
175531--175563	5	6.6	5	86	13	50	78	0	3	18	0.87
175915--176249	175	1.9	170	86	6	478	45	15	17	22	1.85
177078--177134	5	10.8	5	77	17	53	54	0	5	40	1.23
177092--177132	6	7.2	6	81	8	50	60	0	4	34	1.18
177091--177134	17	2.6	17	100	0	88	56	0	6	36	1.26
177599--177651	22	2.3	24	87	12	76	54	5	3	35	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177636--177662	13	2.1	13	100	0	54	51	7	7	33	1.58
177692--177741	18	2.8	18	77	16	52	46	10	6	38	1.62
177734--177760	13	2.1	13	100	0	54	51	7	7	33	1.58
178739--178764	3	8.7	3	100	0	52	0	34	0	65	0.93
179894--180034	18	8.1	17	75	14	99	44	12	9	33	1.74
179894--180034	35	4.0	35	83	5	144	44	12	9	33	1.74
179894--180008	18	6.6	18	84	5	137	43	13	9	33	1.76
186932--187014	21	3.9	21	78	7	78	26	28	24	20	1.99
192315--192343	14	2.1	14	100	0	58	41	44	0	13	1.44
192586--192662	3	25.7	3	100	0	154	0	33	0	66	0.92
193966--194047	15	5.3	17	64	31	58	29	14	19	36	1.92
193967--194057	30	3.0	30	98	0	173	29	15	20	34	1.94
194891--194918	6	4.7	6	100	0	56	50	0	35	14	1.43
204185--204596	20	20.2	20	79	12	405	38	25	19	15	1.91
204185--204596	40	10.1	40	86	6	460	38	25	19	15	1.91
204692--204765	6	12.5	6	98	1	141	32	51	16	0	1.45
205259--205302	6	7.5	6	97	2	81	0	15	52	31	1.44
205405--205849	20	21.8	20	81	15	511	15	19	27	36	1.93
205398--205855	42	11.2	40	86	9	428	15	19	26	37	1.92
205401--205908	20	25.0	20	74	12	396	15	19	26	37	1.92
205405--205911	40	12.4	40	89	5	548	15	19	26	37	1.92
207101--207208	56	1.9	56	94	3	191	28	12	17	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220050--220108	2	29.5	2	100	0	118	50	0	0	49	1.00
220422--220477	12	4.8	13	81	18	61	62	1	0	35	1.06
220440--220477	3	12.7	3	89	10	60	65	0	0	34	0.93
223305--223575	7	38.9	7	72	18	176	40	0	6	53	1.29
223392--223598	2	111.0	2	69	23	123	40	0	5	53	1.27
223307--223569	12	20.7	12	72	17	158	39	0	6	53	1.30
223463--223600	7	20.8	6	74	14	62	40	0	2	55	1.20
225133--225165	15	2.2	15	89	10	50	24	18	0	57	1.40
225147--225206	29	2.1	27	81	6	66	21	6	1	70	1.20
228454--228621	30	5.5	30	75	2	131	19	13	11	56	1.66
228454--228590	60	2.3	60	83	5	170	20	12	10	56	1.64
229368--229400	15	2.1	15	94	5	57	24	6	3	66	1.28
229496--229555	24	2.4	26	88	5	88	36	5	5	53	1.45
233124--233159	2	18.0	2	100	0	72	50	0	0	50	1.00
234792--235056	131	2.0	130	83	3	336	26	31	16	25	1.96
235337--235375	3	13.0	3	100	0	78	33	0	0	66	0.92
245711--245913	38	5.5	37	76	11	154	44	4	9	41	1.58
245736--245904	36	4.6	36	79	15	143	46	4	9	39	1.57
246022--246072	17	3.1	16	80	5	57	31	0	0	68	0.90
246021--246073	15	3.3	15	78	17	54	30	0	0	69	0.88
248292--248446	76	2.0	76	93	3	267	36	5	8	49	1.55
258208--258352	65	2.2	64	82	8	161	28	22	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259694--260005	116	2.7	116	93	1	518	49	8	12	28	1.70
263859--263970	44	2.6	44	79	9	122	29	19	20	30	1.97
263946--263996	20	2.5	20	100	0	102	29	15	25	29	1.96
266619--266774	65	2.4	65	87	3	217	28	23	17	31	1.97
266760--266831	19	3.8	19	94	0	126	26	31	23	18	1.97
267830--267854	10	2.5	10	100	0	50	28	0	0	72	0.86
269014--269090	33	2.4	32	86	4	118	44	15	10	29	1.80
273505--273547	20	2.3	19	88	8	61	34	25	9	30	1.87
275452--275575	63	2.0	63	87	6	180	17	21	20	40	1.92
278134--278176	20	2.3	19	88	8	61	34	25	9	30	1.87
279381--279912	81	6.6	81	88	0	773	28	24	11	35	1.90
280616--280667	19	2.5	21	84	9	63	28	21	17	32	1.96
285626--285671	10	4.5	10	86	5	56	21	4	2	71	1.14
285626--285671	21	2.2	20	84	3	56	21	4	2	71	1.14
287091--287238	74	2.0	74	98	0	287	42	20	2	34	1.66
291068--291868	419	1.9	424	92	3	1369	40	15	16	27	1.89
295951--295985	17	2.1	17	94	0	61	45	20	8	25	1.79
298610--298673	23	2.7	23	82	2	74	82	1	7	7	0.89
298644--298674	13	2.4	13	94	0	53	93	3	0	3	0.41
298591--298687	11	8.5	11	71	11	61	81	2	10	6	0.94
299433--299506	28	2.6	28	82	6	87	39	31	2	27	1.70
301872--302268	54	7.4	54	86	2	476	28	9	19	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301879--302268	162	2.4	161	87	2	541	28	8	19	42	1.82
301779--302305	54	9.8	54	79	7	457	29	9	19	42	1.81
302352--303114	239	3.2	236	85	4	951	32	16	15	34	1.91
303167--303215	25	2.0	25	92	8	82	79	0	6	14	0.91
303520--304107	116	5.1	115	82	4	681	36	15	21	26	1.93
303521--304107	230	2.6	230	86	4	749	36	14	21	26	1.93
303976--304448	202	2.4	200	81	5	569	34	18	19	28	1.95
304600--304633	3	11.3	3	87	12	52	67	0	0	32	0.91
308848--308883	18	2.1	17	89	5	54	19	13	33	33	1.91
311247--311284	2	19.0	2	100	0	76	50	0	0	50	1.00
311430--311487	2	29.0	2	100	0	116	50	0	0	50	1.00
316430--316460	14	2.2	14	100	0	62	58	6	16	19	1.59
321201--321350	60	2.5	59	82	5	176	32	20	6	41	1.78
321444--321620	60	3.0	59	85	5	232	46	2	16	33	1.61
322530--322577	2	24.0	2	100	0	96	50	0	0	50	1.00
340727--340793	27	2.5	26	85	7	82	40	11	8	38	1.74
342177--342218	22	1.9	22	85	9	59	7	23	14	54	1.64
344451--344530	2	40.0	2	100	0	160	50	0	0	50	1.00
345631--345710	35	2.3	35	89	4	117	43	22	0	33	1.53
345658--345726	35	1.9	36	85	2	95	42	28	1	27	1.64
345893--346186	153	2.0	150	86	4	414	35	6	10	48	1.62
348740--348829	45	2.0	45	93	0	153	38	7	22	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351783--351822	18	2.3	18	87	8	57	52	2	0	45	1.14
353631--353668	15	2.5	15	91	0	58	23	36	5	34	1.78
354449--354505	9	6.6	8	83	13	53	70	0	0	29	0.88
354451--354497	3	15.3	3	91	8	69	68	0	0	31	0.90
354637--355146	259	2.0	259	89	2	776	33	16	15	34	1.90
357749--357814	18	3.5	19	86	8	91	6	19	0	74	1.03
357747--357864	9	12.7	9	68	18	55	5	22	0	72	1.06
359154--359274	36	3.3	36	83	5	163	43	1	9	45	1.45
359266--359601	39	8.8	38	82	12	349	46	1	6	45	1.39
360742--360778	14	2.6	14	91	4	56	24	10	0	64	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11