genome.fa.s8103.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1996589

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1691459--1691511	19	2.8	19	94	0	88	26	28	22	22	1.99
1695191--1695282	31	2.9	31	75	3	94	42	9	5	42	1.61
1701394--1701659	95	2.7	97	85	6	362	34	16	17	31	1.93
1702719--1702901	86	2.1	86	91	0	294	28	25	22	22	1.99
1702992--1703994	85	11.8	85	83	2	1133	34	19	18	26	1.95
1703029--1703959	257	3.6	256	89	1	1318	34	19	18	27	1.95
1702992--1703994	342	2.9	341	84	3	1220	34	19	18	26	1.95
1705803--1705830	6	4.7	6	100	0	56	28	0	0	71	0.86
1706365--1706432	19	3.8	18	79	12	70	63	0	1	35	1.04
1712353--1712451	51	1.9	51	83	4	128	37	11	16	35	1.84
1736604--1736660	24	2.4	24	96	0	105	31	14	43	10	1.79
1744814--1744868	28	2.0	28	82	13	69	32	20	10	36	1.87
1745316--1745409	45	2.1	45	87	0	134	21	14	40	23	1.90
1745864--1746182	123	2.6	124	88	4	466	25	18	14	41	1.89
1747000--1747057	22	2.6	22	88	0	89	36	12	18	32	1.88
1747429--1747572	54	2.7	54	84	2	182	26	23	13	36	1.93
1753978--1754051	14	5.4	13	69	16	51	56	12	14	16	1.67
1757492--1757586	45	2.1	45	90	0	145	20	14	42	23	1.89
1758521--1758603	31	2.9	28	85	8	80	43	1	3	51	1.26
1758533--1758615	31	2.7	31	84	1	114	42	3	3	50	1.37
1762001--1762051	14	3.9	13	80	14	61	1	15	1	80	0.89
1762000--1762051	26	2.0	25	88	3	77	1	15	1	80	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1762000--1762051	28	1.9	26	84	7	68	1	15	1	80	0.88
1762658--1762697	3	13.7	3	94	5	73	65	0	0	35	0.93
1763362--1763552	36	5.7	35	68	16	143	40	12	17	28	1.86
1763297--1763554	66	3.9	66	87	2	349	41	12	16	29	1.86
1763398--1763508	30	3.5	30	68	17	89	39	10	18	30	1.85
1763648--1763814	67	2.5	66	84	7	180	37	11	17	34	1.86
1763713--1763861	37	4.3	36	69	17	111	38	12	17	31	1.87
1763780--1763869	33	2.6	34	80	8	101	38	13	14	33	1.85
1766513--1766557	23	2.0	23	95	0	81	28	22	22	26	1.99
1767560--1767606	19	2.5	18	83	10	58	51	23	4	21	1.65
1773569--1773597	3	9.7	3	100	0	58	65	0	0	34	0.93
1777108--1777136	2	14.5	2	100	0	58	51	0	0	48	1.00
1781795--1781891	43	2.2	44	83	7	117	27	13	28	29	1.94
1781880--1781976	41	2.3	42	85	5	133	18	20	26	34	1.96
1790151--1790184	17	1.9	17	88	5	50	44	0	2	52	1.16
1790373--1790412	16	2.5	16	95	0	71	25	32	10	32	1.89
1791213--1791297	39	2.2	39	82	6	100	47	3	2	47	1.32
1791231--1791297	13	5.2	12	75	10	53	49	4	1	44	1.31
1791250--1791301	27	1.9	27	88	0	77	48	1	1	48	1.24
1793751--1793922	46	3.8	46	78	4	152	35	6	28	29	1.83
1794765--1795266	132	3.8	131	87	0	673	40	17	11	30	1.85
1797253--1797289	7	5.3	7	93	0	65	18	0	37	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797387--1797467	41	2.0	41	82	0	99	32	23	19	24	1.98
1797387--1797865	203	2.4	203	87	2	712	33	17	16	32	1.92
1798295--1798402	42	2.6	42	80	4	130	28	22	22	26	1.99
1797919--1798890	244	4.0	244	88	0	1372	33	16	15	34	1.90
1797662--1798890	487	2.5	487	89	1	1811	33	16	15	33	1.91
1806184--1806220	18	2.0	19	94	5	67	54	5	2	37	1.38
1807138--1807502	129	2.8	130	83	3	443	38	17	11	32	1.85
1809637--1809708	3	23.3	3	85	5	81	59	4	0	36	1.17
1809783--1809840	22	2.5	22	81	10	64	48	5	1	44	1.35
1809830--1809907	38	2.0	38	87	7	113	50	2	2	44	1.29
1815344--1815403	19	3.3	19	79	6	63	83	3	8	5	0.90
1815342--1815403	11	5.5	11	75	7	54	82	3	9	4	0.93
1829479--1829590	56	2.0	54	86	3	152	27	8	19	44	1.79
1830490--1830580	37	2.4	37	83	5	121	24	10	17	47	1.80
1830490--1830576	38	2.3	37	86	5	113	24	11	18	45	1.82
1832108--1832285	18	9.9	18	91	0	257	25	31	21	20	1.98
1833057--1833114	20	2.6	22	84	10	75	25	20	20	32	1.97
1833121--1833224	45	2.3	45	80	4	113	28	18	16	36	1.92
1833993--1834278	118	2.4	118	82	4	360	36	16	21	26	1.94
1835383--1835436	27	2.0	27	88	0	81	31	37	12	18	1.89
1836661--1836740	29	2.8	29	79	11	92	27	6	5	61	1.41
1839832--1839860	15	1.9	15	100	0	58	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839910--1839969	3	20.0	3	73	13	52	28	5	0	66	1.12
1839879--1839971	38	2.4	37	78	19	95	30	6	1	62	1.27
1839926--1839957	11	2.8	11	95	4	55	28	6	0	65	1.16
1839913--1839963	11	4.3	12	80	14	54	27	5	0	66	1.14
1839958--1840005	2	24.5	2	91	4	80	45	0	0	54	0.99
1840087--1840146	25	2.4	25	80	8	68	25	3	0	71	1.01
1840188--1840223	17	2.1	18	89	5	56	16	5	0	77	0.94
1841114--1841456	41	8.3	41	79	5	332	29	19	16	33	1.95
1841095--1841458	166	2.2	166	87	2	509	29	19	17	34	1.94
1841134--1841456	125	2.6	123	82	6	373	28	19	16	35	1.94
1845280--1845600	43	7.5	42	82	5	349	22	21	21	34	1.97
1845296--1845598	85	3.6	84	81	7	344	22	21	21	34	1.96
1845296--1845600	128	2.4	128	85	4	402	22	21	20	34	1.97
1850431--1850597	72	2.3	72	85	0	217	29	17	12	40	1.87
1850604--1850679	36	2.1	37	85	2	100	27	19	13	39	1.89
1850611--1850803	101	1.9	102	91	1	316	29	19	11	39	1.87
1850696--1850782	36	2.4	36	82	3	104	26	20	12	40	1.88
1850941--1851076	67	2.1	65	80	6	157	30	22	11	34	1.90
1851045--1851179	33	4.0	33	87	7	207	39	17	10	32	1.84
1851034--1851188	70	2.4	64	86	10	215	38	18	10	33	1.84
1851175--1851357	84	2.2	84	86	0	267	33	25	18	23	1.97
1853091--1853125	16	2.3	15	95	5	61	17	2	0	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1853173--1853212	3	13.0	3	84	5	53	30	2	0	67	1.04
1853181--1853276	41	2.3	40	80	16	99	32	4	1	62	1.21
1853293--1853391	48	2.2	45	84	12	123	22	5	1	71	1.11
1853296--1853384	25	3.3	27	80	12	78	23	5	0	70	1.08
1853291--1853365	28	2.5	29	77	14	73	21	8	0	70	1.12
1853293--1853391	6	15.3	6	73	21	60	22	5	1	71	1.11
1853428--1853464	18	2.1	18	90	5	58	16	8	0	75	1.02
1854223--1854270	10	4.4	10	78	19	51	10	14	25	50	1.74
1854228--1854283	24	2.3	24	84	0	67	14	12	19	53	1.72
1855352--1855424	16	4.7	16	89	3	96	13	10	16	58	1.62
1855354--1855416	32	2.0	32	96	0	117	11	12	19	57	1.65
1858265--1858300	3	12.0	3	93	0	63	63	0	2	33	1.08
1860748--1860794	23	2.0	24	88	12	71	12	10	17	59	1.60
1861619--1861730	40	2.9	36	81	10	125	16	23	19	40	1.91
1869428--1869466	20	1.9	21	85	15	55	33	2	2	61	1.23
1870720--1870778	14	3.7	15	70	25	50	30	16	5	47	1.69
1870719--1870784	34	1.9	34	100	0	132	30	15	7	46	1.73
1872149--1872326	60	3.0	60	83	6	209	33	20	5	40	1.76
1872939--1872990	15	3.5	15	94	0	77	9	65	15	9	1.47
1878003--1878044	15	2.9	15	75	3	50	28	4	0	66	1.12
1880279--1880437	60	2.6	60	81	4	187	35	20	3	41	1.68
1883220--1883695	242	2.0	243	81	3	564	33	10	21	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1884308--1884356	23	2.1	23	81	11	55	51	2	2	44	1.24
1885702--1885772	2	35.5	2	100	0	142	49	0	0	50	1.00
1888721--1888775	27	2.1	27	86	10	78	58	1	0	40	1.09
1889109--1889229	55	2.2	56	82	7	156	31	20	16	31	1.95
1889112--1889340	56	4.1	55	77	11	191	29	21	16	32	1.95
1889371--1889524	83	1.9	83	91	0	254	33	21	19	25	1.97
1889375--1889504	42	3.1	42	78	2	163	33	23	17	26	1.96
1889386--1889519	42	3.2	41	78	6	162	32	22	20	24	1.98
1889627--1889723	42	2.3	41	84	5	124	31	20	22	24	1.98
1889423--1889887	204	2.2	210	89	4	708	31	19	16	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11