genome.fa.s8103.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1996589

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563933--563984	19	2.7	19	93	0	86	26	17	25	30	1.97
564514--564559	15	3.0	15	83	3	56	86	4	8	0	0.68
564514--564603	25	3.7	26	80	11	84	78	6	13	1	0.99
564511--564591	11	7.4	11	75	15	60	79	6	13	1	0.99
565872--566019	36	3.9	37	80	9	165	42	12	11	33	1.78
565870--566020	74	2.0	75	88	5	225	41	11	11	34	1.79
565870--565986	36	3.2	36	86	2	171	42	12	11	32	1.80
565986--566109	63	2.0	63	87	3	178	28	11	13	46	1.78
566135--566194	32	1.9	31	86	10	86	35	15	10	40	1.80
566282--566554	43	6.5	43	68	14	133	26	31	17	24	1.97
566848--566895	3	15.3	3	87	8	69	37	0	0	62	0.95
567253--567299	21	2.3	20	85	10	60	59	14	8	17	1.59
568586--568616	2	15.5	2	100	0	62	51	0	0	48	1.00
568840--568907	25	2.4	27	76	18	77	20	8	5	64	1.43
571640--571700	3	21.7	3	75	18	51	62	0	0	37	0.96
571627--571701	30	2.6	30	83	8	93	58	0	0	41	0.98
571640--571701	5	12.2	5	77	19	58	61	0	0	38	0.96
571940--572595	110	5.9	113	80	8	629	31	17	13	37	1.88
571932--572595	218	3.0	223	84	6	848	31	18	12	37	1.88
573321--573533	112	1.9	114	87	5	317	31	20	13	34	1.92
573424--573981	94	6.0	93	90	3	808	34	21	16	28	1.94
573424--573981	185	3.0	184	88	5	815	34	21	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575243--575308	14	4.7	14	78	12	73	0	16	0	83	0.65
575241--575311	31	2.3	30	84	15	92	0	18	0	81	0.69
575250--575299	7	6.9	7	79	6	55	0	16	0	84	0.63
586724--586809	45	1.9	44	81	9	102	48	3	2	45	1.32
586783--586840	20	2.7	23	80	15	63	51	0	0	48	1.00
588397--588442	3	15.7	3	82	13	60	65	0	0	34	0.93
588384--588443	9	5.9	10	74	16	52	60	0	0	40	0.97
594120--594178	21	2.8	21	84	0	73	18	5	20	55	1.61
594266--594473	43	4.9	43	89	1	231	29	24	20	25	1.99
594298--594516	43	5.1	43	90	0	303	28	23	21	26	1.99
600016--600045	14	2.1	14	93	0	51	10	13	23	53	1.69
600016--600065	24	2.1	24	85	7	66	14	12	18	56	1.68
600794--600860	16	4.3	16	88	3	84	11	11	16	59	1.60
600792--600852	32	1.9	32	89	0	95	9	14	19	55	1.67
606626--606663	19	2.0	20	94	5	69	34	5	18	42	1.73
606630--606672	20	2.2	19	87	4	59	41	4	13	39	1.66
606962--607003	18	2.3	18	100	0	84	16	30	9	42	1.80
607956--608004	19	2.6	19	100	0	98	24	20	26	28	1.99
625255--625321	20	3.1	21	72	23	59	49	1	1	47	1.19
626148--626517	35	10.5	35	88	0	425	34	10	25	29	1.90
626149--626517	105	3.5	105	86	1	477	34	10	25	29	1.90
626769--626893	59	2.1	60	89	1	189	40	20	4	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626786--626895	29	3.8	29	67	7	78	40	18	3	37	1.68
635223--635311	23	3.8	23	77	2	88	16	20	24	38	1.93
635223--635325	23	4.4	23	79	2	71	16	20	25	37	1.93
635305--635367	24	2.7	24	85	4	76	15	23	25	34	1.95
635293--635374	23	3.5	24	83	6	89	14	23	26	35	1.93
639141--639374	37	6.4	36	75	13	167	44	5	8	41	1.58
639465--639549	5	17.4	5	70	24	58	35	3	1	60	1.22
639487--639548	22	2.9	20	74	25	56	33	1	1	62	1.14
639461--639564	54	2.0	51	83	9	129	33	2	0	62	1.16
639465--639557	19	4.8	19	67	20	50	34	3	1	61	1.19
639633--639706	32	2.3	32	95	0	130	22	32	31	13	1.93
642572--642616	23	2.0	23	86	0	63	26	28	24	20	1.99
642595--642895	149	2.0	146	93	3	514	34	20	16	28	1.95
647868--647926	30	2.0	30	89	0	91	40	22	16	20	1.91
649230--649264	18	2.1	18	89	10	56	8	25	14	51	1.70
651377--651405	11	2.6	11	100	0	58	13	6	10	68	1.37
651921--652536	160	3.9	160	88	2	852	41	12	15	31	1.83
654691--654719	14	2.1	14	100	0	58	48	0	24	27	1.51
661808--661852	16	2.8	16	89	0	72	55	20	13	11	1.68
662945--662988	14	3.1	14	100	0	88	47	29	15	6	1.72
663385--663436	2	27.0	2	86	7	63	48	0	1	50	1.12
663367--663430	25	2.5	24	82	7	65	46	0	4	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664285--664319	2	17.5	2	100	0	70	51	0	0	48	1.00
664513--664560	22	2.2	22	85	7	62	43	4	0	52	1.20
666514--666554	22	1.9	21	85	14	57	21	9	12	56	1.65
674032--674091	32	1.9	32	89	3	95	40	13	16	30	1.87
678918--678944	6	4.5	6	100	0	54	81	0	0	18	0.69
679222--679292	21	3.4	21	90	0	106	38	23	12	25	1.90
679877--679905	4	7.5	4	92	7	51	75	0	0	24	0.80
680422--680464	20	2.2	20	91	0	68	32	20	20	25	1.97
680420--680608	60	3.1	60	77	11	156	41	22	15	21	1.90
680466--680608	20	7.1	20	79	6	155	44	23	13	18	1.86
680472--680608	40	3.4	39	86	6	202	43	23	14	18	1.87
680767--680817	22	2.3	22	93	6	86	19	45	13	21	1.85
681197--681228	14	2.3	14	94	0	55	6	21	21	50	1.71
682603--682701	21	4.7	21	79	9	103	22	36	18	23	1.95
682603--682701	42	2.3	41	81	10	119	22	36	18	23	1.95
684131--684168	14	2.7	14	100	0	76	28	0	23	47	1.52
684346--684432	20	4.3	20	77	0	75	32	18	20	28	1.96
684430--684482	20	2.7	20	83	16	58	13	13	24	49	1.77
684447--684495	20	2.4	21	83	12	59	18	12	20	48	1.79
687050--687101	24	2.2	24	82	0	59	36	17	19	26	1.94
688608--688687	31	2.6	31	91	0	124	31	35	2	31	1.71
690415--690444	14	2.1	14	93	0	51	40	3	6	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694737--694779	20	2.2	20	83	8	52	32	4	6	55	1.47
697373--697410	14	2.5	16	83	8	53	68	0	2	28	1.03
697567--697698	19	6.7	20	82	6	117	31	9	22	36	1.86
697606--697738	19	6.6	21	82	8	100	27	8	22	42	1.82
697567--697698	39	3.3	38	83	7	131	31	9	22	36	1.86
697684--697772	20	4.4	20	89	0	142	19	11	24	44	1.83
697664--697776	60	1.9	60	88	3	174	21	9	23	46	1.80
697665--697797	60	2.2	61	85	4	171	21	11	23	43	1.85
697684--697797	40	2.8	40	84	7	126	20	12	23	43	1.85
697686--697814	60	2.2	60	81	5	154	21	12	24	41	1.88
698548--698590	13	3.5	13	75	12	54	18	13	37	30	1.90
698540--698599	24	2.5	24	100	0	120	15	11	38	35	1.83
700456--700718	58	4.5	58	80	6	253	36	11	22	29	1.89
700949--701166	44	4.9	44	95	0	391	38	7	22	32	1.81
702099--703175	219	4.9	220	83	3	1293	27	14	24	32	1.95
702099--703175	434	2.5	435	84	4	1368	27	14	24	32	1.95
703092--703615	139	3.8	138	85	3	644	25	16	27	29	1.97
703092--703615	276	1.9	277	85	4	736	25	16	27	29	1.97
703824--704074	103	2.5	100	79	7	283	37	11	15	35	1.84
707170--707227	26	2.2	26	80	14	66	1	10	5	82	0.89
707178--707232	23	2.4	22	84	6	65	3	9	3	83	0.88
709744--709781	20	1.9	20	94	0	67	31	34	15	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709828--709923	26	3.7	26	98	0	183	23	22	23	29	1.99
715672--715753	43	1.9	43	87	5	121	24	23	23	29	1.99
717263--717314	21	2.5	21	81	3	52	7	50	13	28	1.69
717775--717809	2	17.5	2	100	0	70	51	0	0	48	1.00
718449--718486	20	1.9	20	94	0	67	31	34	15	18	1.92
718447--718620	91	1.9	91	85	4	244	29	25	16	29	1.96
720083--720171	40	2.2	40	95	0	160	28	25	7	38	1.84
722380--722445	25	2.6	25	87	4	87	60	4	12	22	1.50
722418--722487	32	2.1	34	89	5	108	54	4	14	27	1.58
722611--722667	29	2.0	29	82	0	69	47	8	19	24	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11