genome.fa.s8103.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008103.1 Hibiscus syriacus cultivar Beakdansim tig00110633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1996589

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1263 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360742--360774	14	2.4	14	89	0	57	24	9	0	66	1.20
360737--360778	15	2.8	15	82	10	50	23	9	0	66	1.21
360854--360896	14	3.1	14	89	0	59	18	0	4	76	0.95
360806--360896	18	4.8	18	68	23	53	21	4	4	69	1.24
360970--360996	12	2.2	12	100	0	54	37	7	0	55	1.28
367723--367818	38	2.5	38	86	3	140	23	26	22	27	2.00
367967--368071	46	2.3	45	91	1	165	34	17	5	42	1.73
369293--369329	2	18.5	2	88	0	56	45	5	0	48	1.25
370681--370739	3	20.3	3	80	13	70	69	1	1	27	1.07
373274--373300	2	13.5	2	100	0	54	51	0	0	48	1.00
375132--375179	19	2.5	19	80	6	53	43	0	2	54	1.12
385234--385277	2	22.0	2	100	0	88	50	0	0	50	1.00
386952--386996	22	2.1	22	87	4	65	24	28	26	20	1.99
387404--387440	19	1.9	19	89	10	58	32	29	13	24	1.93
387536--387578	20	2.2	20	91	0	68	41	18	18	20	1.90
387800--387871	22	3.3	22	78	3	83	23	38	13	23	1.91
387790--387856	22	3.1	22	82	4	75	23	41	11	22	1.87
388269--388319	20	2.5	20	93	0	84	13	13	21	50	1.76
388283--388326	20	2.2	20	91	0	70	11	13	20	54	1.69
390137--390198	31	2.0	31	87	9	90	22	8	17	51	1.71
390335--390471	34	3.9	34	77	11	130	35	21	22	19	1.96
390317--390475	74	2.2	73	89	1	246	37	22	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390369--390475	20	5.7	20	74	12	100	36	23	22	17	1.95
390471--390507	19	1.9	19	88	0	56	13	16	29	40	1.86
390500--390580	33	2.4	34	87	2	119	14	18	24	41	1.88
390552--390601	20	2.5	20	100	0	100	24	20	26	30	1.98
390611--390650	20	2.0	20	95	0	71	17	10	22	50	1.76
391157--391215	20	2.8	21	75	12	59	22	40	16	20	1.91
391125--391233	41	2.6	42	77	9	125	19	36	19	24	1.94
392602--392669	30	2.3	30	100	0	136	27	2	13	55	1.52
392819--393102	20	14.9	20	78	11	274	22	19	21	35	1.96
392812--393099	54	5.0	60	84	8	246	22	19	21	36	1.95
392777--393099	74	4.3	74	79	9	289	22	20	21	36	1.95
393276--393310	18	1.9	18	94	0	61	17	2	25	54	1.57
394473--394509	14	2.6	14	95	0	65	48	24	16	10	1.77
395296--395352	18	3.2	18	100	0	114	22	43	0	33	1.54
397661--397723	20	2.9	21	79	9	65	15	25	34	23	1.95
398783--398932	42	3.6	41	71	9	115	29	16	22	31	1.96
398811--398965	82	1.9	82	84	6	206	27	14	23	34	1.94
398809--399120	83	3.8	82	75	5	254	30	12	22	33	1.92
399309--399402	41	2.3	41	81	3	109	35	19	21	24	1.96
400314--400340	14	1.9	14	100	0	54	40	7	7	44	1.60
404300--404361	21	3.0	21	82	0	79	41	17	38	1	1.59
404292--404400	21	5.2	21	75	6	78	41	16	39	2	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404816--404904	42	2.1	43	87	2	126	35	19	19	25	1.95
404824--405004	43	4.2	42	77	3	148	31	22	19	26	1.98
404926--405035	43	2.6	43	83	0	139	30	28	14	27	1.95
408083--408125	20	2.2	20	83	8	52	37	4	2	55	1.33
411771--411836	24	2.8	24	100	0	132	36	19	22	21	1.95
412655--412761	20	5.3	20	82	6	135	22	22	27	28	1.99
412655--412782	61	2.1	61	89	0	193	22	22	25	28	1.99
412776--412823	20	2.4	20	100	0	96	22	18	16	41	1.90
423115--423183	22	3.3	21	76	13	79	50	1	2	44	1.25
422988--423153	90	1.9	89	94	1	296	40	8	5	45	1.57
429795--429842	18	2.7	18	80	0	60	27	10	14	47	1.76
432058--432138	40	2.0	40	97	0	153	43	22	13	20	1.87
432889--432961	25	3.0	24	91	2	110	34	13	26	26	1.93
438524--438584	30	2.0	30	100	0	122	31	32	16	19	1.94
441603--441780	60	3.0	59	81	6	198	41	5	20	33	1.74
442501--442552	2	27.0	2	92	7	90	50	0	0	50	1.00
443723--443794	34	2.1	34	94	0	126	31	8	9	50	1.65
444677--444821	59	2.4	59	78	10	145	28	15	22	33	1.94
458297--459456	134	8.7	134	85	2	1445	30	16	23	30	1.96
458297--459456	403	2.9	402	87	1	1621	30	16	23	30	1.96
463855--463894	19	2.1	19	85	4	53	22	15	22	40	1.91
466845--466896	21	2.4	22	83	3	61	26	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466845--466924	23	3.6	23	75	8	85	26	25	23	25	2.00
466843--466942	43	2.3	41	77	9	101	28	24	24	24	2.00
467355--467379	13	1.9	13	100	0	50	32	8	8	52	1.60
469609--469759	65	2.3	64	83	7	173	33	21	17	27	1.96
474761--474840	16	5.0	16	79	8	74	5	17	0	77	0.94
474789--474825	6	6.5	6	87	6	51	0	13	0	86	0.57
474784--474826	22	2.0	22	85	0	59	2	16	0	81	0.79
474789--474826	7	5.4	7	84	9	51	0	13	0	86	0.56
477165--477213	24	2.0	24	100	0	98	32	12	12	42	1.79
478905--478963	17	3.1	19	78	11	59	55	0	18	25	1.42
485180--485215	15	2.4	15	100	0	72	58	0	0	41	0.98
487030--487088	20	2.8	20	73	17	57	18	16	3	61	1.49
487844--487962	60	2.0	58	88	9	179	34	19	4	42	1.71
488555--488579	2	12.5	2	100	0	50	52	0	0	48	1.00
497821--497887	15	4.7	15	75	12	61	35	1	1	61	1.15
499355--499469	30	3.8	30	80	6	117	21	11	7	59	1.57
503122--503218	15	5.3	19	75	19	75	71	10	17	1	1.20
503127--503224	49	2.0	50	90	6	155	72	9	17	1	1.16
503181--503239	22	2.8	21	82	7	66	74	6	15	3	1.16
503154--503237	17	5.0	17	77	18	61	75	8	14	2	1.14
503609--504283	343	2.0	339	93	1	1161	35	21	16	26	1.94
507973--508036	33	1.9	33	87	0	92	31	15	29	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508087--508124	19	2.0	19	100	0	76	31	10	15	42	1.81
512657--512945	64	4.5	63	75	12	225	29	13	14	42	1.83
512943--513002	31	1.9	32	86	3	86	31	15	11	41	1.82
512951--513016	31	2.2	31	83	8	82	31	18	12	37	1.87
513128--513567	129	3.4	126	78	8	450	26	33	16	23	1.96
513110--513567	133	3.5	130	80	5	510	26	33	16	23	1.96
513760--513834	3	25.3	3	81	12	93	34	0	0	65	0.93
515243--515320	29	2.7	30	80	9	99	24	15	5	55	1.61
519644--519758	45	2.4	48	81	8	119	75	8	13	1	1.11
519644--519751	32	3.4	31	78	18	89	75	8	13	1	1.10
519664--519758	45	2.1	45	84	9	124	76	8	12	2	1.09
519717--519751	13	2.7	13	86	13	54	77	5	11	5	1.12
519648--519766	50	2.4	50	80	7	125	76	7	13	2	1.10
519677--519767	17	5.4	17	70	23	59	78	6	12	3	1.07
519731--519767	18	2.1	18	90	5	58	78	5	10	5	1.08
521340--521381	17	2.4	18	80	11	52	40	19	11	28	1.87
522090--522127	15	2.6	15	84	16	53	71	0	21	7	1.11
529340--529477	65	2.1	64	80	9	147	27	15	13	43	1.84
529483--529555	31	2.4	31	84	6	87	30	17	10	41	1.84
529426--529627	97	2.1	99	81	9	236	29	19	13	38	1.90
529908--530012	42	2.6	40	82	8	115	21	35	20	22	1.96
529664--530089	133	3.2	131	81	5	511	25	34	16	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530300--530356	3	19.3	3	83	16	75	33	0	0	66	0.92
530300--530356	18	3.2	19	88	11	86	33	0	0	66	0.92
531763--531840	29	2.7	30	78	9	90	24	14	6	55	1.62
543033--543112	29	2.8	29	92	3	126	45	15	20	20	1.86
543197--543230	15	2.3	15	94	0	59	14	20	32	32	1.93
548947--549027	29	2.8	29	90	3	128	45	14	20	18	1.85
548967--549014	15	3.3	15	73	5	53	50	12	18	18	1.78
549112--549145	15	2.3	15	94	0	59	14	20	32	32	1.93
553625--553683	20	2.8	20	73	17	57	18	16	5	59	1.55
554440--554558	60	2.0	58	88	9	179	34	19	4	42	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11