genome.fa.s8162.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008162.1 Hibiscus syriacus cultivar Beakdansim tig00110733_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3688897

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1865 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3536496--3536530	3	12.0	3	87	6	54	62	0	0	37	0.95
3536498--3536538	20	2.0	20	85	0	55	68	0	0	31	0.90
3553017--3553070	24	2.3	24	83	3	74	18	37	18	25	1.94
3560943--3560980	20	1.9	20	94	0	67	44	10	23	21	1.83
3560943--3560986	20	2.3	19	88	7	63	45	9	25	20	1.80
3567038--3567077	20	2.0	20	100	0	80	50	10	10	30	1.69
3567315--3567363	19	2.4	21	83	12	59	34	0	0	65	0.93
3569687--3569989	158	1.9	158	94	0	534	42	12	6	38	1.69
3571685--3571745	22	2.7	23	76	19	74	55	6	16	21	1.63
3572774--3572940	43	3.9	43	76	3	165	25	17	23	32	1.97
3572774--3572934	86	1.9	86	81	5	200	25	18	24	31	1.98
3572974--3573085	44	2.6	43	83	7	136	23	20	26	29	1.99
3575168--3575316	41	3.6	40	78	11	140	45	17	14	22	1.85
3575212--3575317	42	2.5	42	83	4	117	46	16	14	22	1.83
3576819--3576909	40	2.2	40	84	5	119	32	18	15	32	1.92
3576833--3576910	40	2.0	40	92	0	129	33	17	15	33	1.92
3576903--3576984	42	2.0	42	82	4	103	24	19	20	35	1.96
3579737--3579796	30	2.0	30	93	3	104	43	3	10	43	1.54
3580521--3580554	2	17.0	2	100	0	68	50	0	0	50	1.00
3586896--3586936	21	2.0	21	85	9	57	43	2	2	51	1.28
3588113--3588154	17	2.4	18	84	4	59	69	2	7	21	1.25
3599362--3599406	20	2.3	20	80	3	56	46	4	2	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3599407--3599442	14	2.7	13	83	8	54	52	0	5	41	1.24
3600798--3600864	22	3.1	22	77	16	77	47	1	1	49	1.19
3600832--3600877	22	2.1	22	84	8	58	50	2	0	47	1.13
3605359--3605387	14	2.0	15	93	6	51	72	6	20	0	1.07
3610053--3610193	36	3.9	35	78	4	138	37	17	18	26	1.93
3612608--3614267	831	2.0	832	90	1	2652	31	15	17	35	1.91
3615113--3615156	6	6.7	7	89	10	67	27	0	0	72	0.85
3615113--3615156	13	3.4	13	90	9	72	27	0	0	72	0.85
3615114--3615155	19	2.2	19	100	0	84	28	0	0	71	0.86
3618902--3619063	78	2.1	77	95	1	288	25	11	10	53	1.68
3621266--3621324	29	2.0	29	90	0	91	28	20	5	45	1.72
3621262--3621516	110	2.3	109	88	3	361	28	21	10	40	1.86
3621376--3621436	29	2.1	29	87	0	86	24	22	8	44	1.80
3621407--3621719	80	3.9	80	86	4	427	28	22	13	36	1.92
3621405--3621699	159	1.8	161	89	5	474	27	22	12	37	1.90
3621666--3622187	68	7.7	68	90	1	789	30	27	14	27	1.95
3622415--3622552	54	2.5	54	79	10	147	35	18	10	34	1.86
3622932--3623120	94	2.0	95	88	1	281	29	23	14	32	1.95
3625557--3625617	29	2.1	29	90	0	95	24	24	8	42	1.82
3625477--3625697	109	2.1	103	86	7	300	26	23	10	39	1.87
3625586--3625903	81	3.9	81	86	0	413	25	23	12	38	1.90
3625850--3626241	68	5.8	68	85	1	520	31	24	14	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3626450--3626592	55	2.6	55	84	5	175	34	20	13	30	1.91
3627035--3627092	22	2.8	20	77	10	62	31	29	12	27	1.92
3626978--3627166	94	2.0	95	91	1	308	28	24	14	32	1.95
3627169--3627223	21	2.6	21	94	0	101	36	14	14	34	1.87
3631432--3631476	16	2.8	16	86	6	65	31	4	24	40	1.75
3631432--3631478	8	5.9	8	80	9	51	31	4	25	38	1.75
3631557--3631726	68	2.5	68	89	0	261	35	12	22	29	1.91
3631662--3631959	83	3.6	83	89	2	431	31	18	22	28	1.97
3632918--3632978	32	1.9	32	100	0	122	57	19	4	18	1.58
3643016--3643052	7	5.3	7	93	0	65	16	0	37	45	1.47
3646206--3646257	2	26.5	2	96	3	97	51	0	0	48	1.00
3647043--3647073	14	2.2	14	94	0	53	61	6	0	32	1.21
3659113--3659142	13	2.4	13	94	5	53	43	0	30	26	1.55
3670668--3670692	2	12.5	2	100	0	50	48	0	0	52	1.00
3674958--3674989	14	2.2	15	94	5	57	37	0	0	62	0.95
3675011--3675052	2	22.0	2	80	9	52	52	0	4	42	1.22
3675009--3675051	16	2.9	15	89	6	61	53	0	4	41	1.21
3682435--3682565	41	3.2	41	68	14	115	35	19	19	24	1.95
3682424--3682578	83	1.9	83	88	0	238	34	20	20	23	1.96
3682453--3682582	41	3.2	40	70	14	111	32	21	25	20	1.98
3682435--3682599	83	2.0	83	86	0	231	34	20	21	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!