genome.fa.s8162.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008162.1 Hibiscus syriacus cultivar Beakdansim tig00110733_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3688897

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1865 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193479--194109	231	2.7	232	90	2	1016	30	20	21	27	1.98
194080--194122	22	2.0	22	90	0	68	37	16	23	23	1.94
193012--194199	555	2.1	549	87	4	1398	31	20	20	27	1.98
194468--194507	3	13.3	3	83	0	53	40	2	0	57	1.12
194465--194520	24	2.3	24	81	6	69	50	1	0	48	1.11
195743--195791	21	2.5	21	84	12	61	48	0	0	51	1.00
195741--195784	21	2.1	21	91	4	72	50	0	0	50	1.00
200383--200501	26	4.3	26	79	12	139	40	19	18	21	1.92
216020--216057	15	2.5	15	91	0	58	10	63	18	7	1.50
219249--219278	14	2.1	14	93	0	51	50	6	0	43	1.28
219814--219847	16	2.2	16	89	5	52	55	0	0	44	0.99
220438--220475	17	2.2	17	86	9	51	57	5	15	21	1.57
222864--222899	17	2.1	17	94	0	63	22	22	27	27	1.99
226392--226421	2	15.0	2	100	0	60	50	0	0	50	1.00
226681--226733	18	2.9	18	94	0	97	16	22	32	28	1.96
230799--230833	17	2.1	17	100	0	70	22	5	17	54	1.64
236559--236680	3	40.7	3	93	0	208	66	0	1	31	1.02
236930--237715	116	6.8	114	87	4	1007	29	19	14	36	1.91
236930--237718	229	3.4	229	85	5	1103	29	19	14	36	1.91
236930--237715	345	2.3	343	85	4	1075	29	19	14	36	1.91
238359--239306	83	11.6	83	95	2	1554	37	22	13	26	1.91
240141--240206	8	7.8	8	74	12	51	7	15	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252441--252470	15	1.9	16	93	6	53	0	16	3	80	0.85
252926--253044	3	39.7	3	88	3	177	65	0	1	32	1.03
259339--259371	15	2.3	15	89	5	50	54	0	3	42	1.15
259467--259527	15	4.2	14	77	20	63	67	0	4	27	1.11
260911--260968	3	20.0	3	77	13	59	63	1	0	34	1.04
260911--260963	14	3.6	15	85	10	65	62	1	0	35	1.06
260911--260953	17	2.6	17	88	3	61	60	2	0	37	1.10
260925--260974	17	2.9	17	82	11	50	66	0	2	32	1.03
261086--261574	76	6.4	76	93	1	789	33	22	19	24	1.97
261086--261574	231	2.1	228	92	1	809	33	22	19	24	1.97
261698--261985	76	3.8	76	96	0	531	34	22	19	23	1.96
261988--262310	164	2.0	166	94	1	569	38	13	13	34	1.84
272944--272976	15	2.3	15	89	5	50	54	0	3	42	1.15
273082--273131	15	3.3	15	76	15	50	68	0	6	26	1.13
280862--280965	52	2.0	52	94	0	181	38	11	10	39	1.76
281870--281954	29	2.9	30	87	3	120	28	42	0	29	1.56
290638--290663	12	2.2	12	100	0	52	15	23	30	30	1.95
294714--294748	12	2.8	12	95	4	61	82	0	17	0	0.66
295608--296397	262	3.0	262	93	1	1352	28	22	20	28	1.98
295565--296339	44	17.6	44	69	6	381	28	21	21	28	1.99
295577--296414	133	6.3	133	92	1	1393	28	22	20	28	1.99
296601--296674	29	2.5	30	86	2	105	32	39	0	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299954--300009	17	3.2	17	75	10	60	37	0	7	55	1.27
300892--300956	30	2.1	30	86	8	87	55	3	4	36	1.36
300956--300994	2	19.5	2	89	0	60	51	0	0	48	1.00
305835--305895	2	32.5	2	87	12	94	50	0	0	49	1.00
306171--306226	27	2.1	27	93	0	94	35	26	10	26	1.89
306472--306534	19	3.3	19	80	10	74	12	31	22	33	1.91
306805--306843	21	1.9	20	89	5	60	61	0	0	38	0.96
311375--311421	18	2.7	18	90	3	69	36	8	25	29	1.86
311741--312286	251	2.1	255	90	5	852	39	20	13	26	1.89
319746--319784	20	1.9	21	89	5	62	43	7	12	35	1.72
322386--322440	19	2.8	19	77	2	65	38	14	12	34	1.84
322385--322450	20	3.3	20	77	10	73	36	12	16	34	1.86
323456--323505	22	2.3	22	96	0	91	34	28	12	26	1.92
326204--326236	2	16.5	2	100	0	66	51	0	0	48	1.00
327120--327151	14	2.3	15	89	10	50	50	3	0	46	1.17
331830--331908	21	3.7	21	75	6	77	18	20	26	34	1.96
331822--331887	21	3.0	23	77	6	82	19	22	27	30	1.98
331822--331914	44	2.1	44	91	0	150	20	20	23	35	1.96
333678--333722	23	2.0	23	86	8	65	22	22	26	28	1.99
342699--342755	4	14.8	4	92	7	100	22	0	0	77	0.77
342679--342780	8	12.4	8	75	23	56	26	0	0	73	0.83
342812--342859	21	2.3	21	85	3	71	35	35	16	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348815--348890	40	1.9	40	83	5	100	43	14	14	27	1.84
350033--350610	123	4.7	123	85	2	732	38	16	20	24	1.92
350776--350840	3	20.7	3	87	9	78	30	0	1	67	1.00
360051--360092	22	1.9	22	85	0	57	38	21	7	33	1.81
360050--360098	22	2.2	22	77	0	53	42	20	6	30	1.76
361809--361977	20	8.3	20	77	6	142	26	23	20	30	1.98
363040--363076	14	2.6	14	91	4	56	51	21	21	5	1.68
365194--365463	140	1.9	140	97	0	513	29	12	15	42	1.84
365434--365678	20	12.9	20	76	10	226	34	21	17	26	1.95
365473--365727	54	4.6	55	81	9	261	34	21	17	25	1.96
365717--365774	20	2.9	20	78	0	71	13	17	24	44	1.85
365873--365934	14	4.3	14	77	6	61	46	14	0	38	1.45
367899--367953	19	2.8	20	86	5	76	38	23	20	18	1.93
369937--370043	20	5.4	20	85	3	119	45	23	16	14	1.84
370429--370471	22	2.0	22	100	0	86	18	13	41	25	1.88
370654--370760	20	5.3	20	90	0	160	25	21	26	27	1.99
370651--370784	40	3.3	40	84	2	144	25	21	24	28	1.99
370651--370784	60	2.2	60	81	2	162	25	21	24	28	1.99
370787--370843	21	2.7	21	84	10	80	42	17	21	19	1.90
375528--375586	22	2.7	22	91	0	91	40	5	16	37	1.71
375761--375815	23	2.4	23	78	6	67	41	27	16	14	1.87
382021--382066	21	2.2	20	81	7	56	41	10	8	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386682--387193	16	33.8	16	73	15	252	33	0	66	0	0.96
386726--387193	6	76.8	6	75	15	279	31	0	68	0	0.92
386760--387151	4	96.8	4	73	16	231	30	0	69	0	0.89
386793--387194	2	209.0	2	70	8	109	32	0	67	0	0.93
394256--394364	35	3.0	37	90	8	179	29	4	20	45	1.70
401325--401397	3	24.7	3	81	13	89	35	0	0	64	0.94
402894--403008	30	3.9	29	79	4	113	16	15	6	60	1.55
405000--405034	13	2.8	13	95	4	63	45	8	37	8	1.65
407982--408204	30	7.5	29	78	6	155	17	13	11	57	1.64
408009--408175	90	1.9	90	83	5	221	20	11	8	58	1.60
407994--408213	60	3.7	59	75	5	174	19	13	9	57	1.64
408484--408514	5	6.2	5	92	0	53	16	0	3	80	0.83
409413--409475	3	21.0	3	72	18	51	33	3	0	63	1.10
409409--409464	11	5.2	11	79	10	62	35	1	0	62	1.06
411074--411152	4	19.8	4	92	0	113	49	6	0	44	1.28
411074--411152	10	7.9	10	92	0	113	49	6	0	44	1.28
411074--411151	14	5.6	14	95	0	120	50	6	0	43	1.28
413523--413613	43	2.1	44	95	2	166	54	5	6	32	1.49
415778--416000	106	2.1	106	98	0	428	26	24	14	34	1.94
417885--417932	3	15.7	3	83	12	62	35	2	0	62	1.07
417885--417925	14	2.7	15	92	7	66	34	2	0	63	1.08
422117--422258	65	2.2	63	84	8	180	32	16	23	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426283--426421	65	2.2	63	82	8	165	33	17	22	25	1.96
426429--426466	20	1.9	20	94	0	67	34	23	21	21	1.97
430139--430206	5	13.0	5	77	20	68	82	1	14	1	0.82
430142--430203	12	5.9	10	81	14	72	83	1	12	1	0.79
430128--430206	15	5.1	15	84	6	95	81	1	16	1	0.83
430132--430211	31	2.4	32	85	10	108	81	2	15	1	0.87
430153--430203	22	2.4	22	90	3	77	84	0	13	1	0.71
430132--430212	27	3.0	27	83	7	103	81	2	14	1	0.86
431255--431317	33	1.9	32	84	9	83	31	12	25	30	1.93
431548--431622	28	2.7	28	93	0	132	40	42	14	2	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16