genome.fa.s8164.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008164.1 Hibiscus syriacus cultivar Beakdansim tig00110744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2577652

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  1  of  11  ( 1239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7149--7179	2	15.5	2	100	0	62	51	0	0	48	1.00
19118--19174	21	2.7	21	97	0	105	22	24	24	28	2.00
19581--19632	16	3.8	13	74	18	52	42	0	9	48	1.36
19585--19615	16	1.9	16	100	0	62	45	0	6	48	1.28
21339--21372	12	2.8	12	90	4	50	44	5	11	38	1.65
21397--21437	18	2.2	20	91	8	68	70	14	0	14	1.16
21888--21964	21	3.5	21	68	16	66	27	19	20	32	1.97
21860--21963	45	2.3	44	93	1	172	29	19	21	29	1.97
31598--31647	22	2.3	22	100	0	100	14	12	20	54	1.71
37074--37129	27	2.0	29	82	6	71	21	10	12	55	1.67
37335--37422	44	2.0	44	97	0	167	26	20	12	40	1.88
47316--47549	126	1.9	126	79	1	272	25	13	22	38	1.91
47558--47608	26	2.0	26	84	0	66	33	13	19	33	1.91
64475--64593	55	2.2	55	83	3	150	52	11	10	26	1.69
64887--65385	108	4.4	108	74	10	394	38	13	16	31	1.87
64802--65414	226	2.7	226	90	1	931	39	14	14	32	1.86
65691--65817	50	2.5	50	84	2	166	16	33	31	18	1.93
65691--65817	51	2.5	51	83	2	168	16	33	31	18	1.93
70428--70648	110	2.0	111	95	0	399	44	10	8	36	1.69
70773--70811	20	2.0	19	90	5	60	43	0	23	33	1.54
70948--71050	51	2.0	50	86	1	143	19	31	33	15	1.93
71315--71690	179	2.1	175	80	8	417	33	12	11	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76318--76357	21	1.9	21	84	0	53	40	35	7	17	1.78
77103--77130	14	2.0	14	100	0	56	64	0	0	35	0.94
77833--77875	18	2.4	18	100	0	86	37	20	4	37	1.74
79348--79385	18	2.1	18	90	0	58	52	7	2	36	1.45
81831--81887	20	2.7	21	78	8	62	33	19	22	24	1.97
88751--88974	8	26.5	8	66	19	64	73	8	1	16	1.13
88748--88865	7	15.7	7	71	13	74	75	5	0	17	1.05
88811--88908	19	5.3	19	75	16	82	73	8	0	18	1.07
88794--88908	37	3.2	37	84	8	130	73	7	0	18	1.06
88811--88881	30	2.5	30	90	6	112	73	7	0	19	1.06
88835--88956	49	2.4	50	78	13	115	71	9	1	17	1.21
88841--88985	37	3.9	37	70	16	95	71	8	2	16	1.23
88916--88959	15	3.1	14	81	12	54	75	11	0	13	1.06
89213--89262	21	2.4	21	75	0	55	40	8	34	18	1.79
89270--89317	21	2.3	21	85	0	60	50	2	27	20	1.60
89972--90026	11	5.2	11	78	8	69	40	1	7	50	1.40
89961--90052	22	4.3	22	70	21	70	46	3	4	45	1.39
89992--90148	2	83.0	2	65	25	58	46	4	3	45	1.39
90320--90432	33	3.2	33	67	18	93	28	11	8	51	1.68
91428--91577	43	3.3	46	83	10	175	48	4	4	42	1.44
91487--91662	37	4.7	37	78	18	170	47	2	5	44	1.41
92182--92216	19	1.9	19	88	11	56	60	28	11	0	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93213--93239	12	2.2	12	100	0	54	37	7	0	55	1.28
93638--93769	68	1.9	68	96	0	246	28	17	17	37	1.92
94093--94136	16	2.8	15	80	10	52	11	6	2	79	1.01
95307--95358	19	2.8	19	73	2	52	40	3	3	51	1.38
96318--96351	17	2.0	17	88	0	50	20	14	8	55	1.65
97171--97231	13	4.7	13	85	0	77	29	18	16	36	1.92
113364--113415	18	2.9	18	91	0	86	19	25	30	25	1.98
113573--113609	7	5.4	7	90	6	58	35	0	24	40	1.55
118726--118808	43	1.9	43	90	4	132	28	18	6	46	1.72
119609--119685	9	9.5	8	82	12	79	35	1	0	63	1.03
119609--119688	12	7.2	11	82	15	78	35	1	0	63	1.02
119609--119668	3	20.0	3	86	13	88	35	0	0	65	0.93
121054--121119	20	3.2	20	66	16	53	16	22	22	37	1.93
125306--125438	65	2.0	65	84	5	171	31	9	26	33	1.87
125516--125564	22	2.2	22	96	0	89	34	12	14	38	1.83
126162--126227	20	3.2	20	66	16	53	16	22	22	37	1.93
126696--126755	12	5.4	11	81	15	61	36	3	0	60	1.14
126695--126735	3	14.0	3	82	14	50	36	2	0	60	1.10
128052--128089	18	2.2	17	90	4	58	47	0	7	44	1.32
131077--131127	24	2.1	24	100	0	102	21	23	19	35	1.96
149968--150029	20	3.2	19	77	6	70	75	0	24	0	0.80
149968--150029	10	6.3	10	81	9	56	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149990--150024	13	2.6	13	90	4	52	85	0	14	0	0.59
150369--150402	18	1.9	17	88	5	50	41	2	5	50	1.42
151474--151647	20	8.6	20	68	20	96	52	5	3	39	1.41
151473--151537	34	1.9	34	93	0	112	52	3	3	41	1.32
151500--151594	48	2.0	48	95	0	172	53	4	2	40	1.32
153031--153059	2	15.0	2	92	7	51	48	0	0	51	1.00
154813--154868	23	2.4	24	85	11	80	28	30	5	35	1.80
154819--154876	23	2.6	22	89	7	91	29	31	3	36	1.74
165329--165440	37	3.0	37	93	0	188	41	14	12	32	1.83
165985--166084	44	2.3	43	86	8	132	32	2	4	62	1.25
166148--166197	23	2.1	23	85	3	64	20	6	0	74	1.03
169262--169310	13	4.0	13	77	20	52	75	2	14	8	1.12
169382--169518	68	2.0	69	94	1	240	37	23	14	24	1.92
170439--170545	32	3.3	32	81	2	108	26	14	19	39	1.91
171746--171852	34	3.0	37	87	8	175	26	21	14	38	1.91
171917--171957	21	2.0	21	95	0	73	24	19	12	43	1.85
171958--172073	34	3.4	34	95	1	205	41	18	7	32	1.79
172663--172771	36	3.0	36	91	4	166	40	14	13	31	1.85
172671--172773	37	2.8	37	92	4	165	40	15	13	30	1.86
173351--173458	42	2.5	42	79	11	114	28	2	1	66	1.16
173431--173499	17	4.3	16	69	12	52	17	4	1	76	1.02
173467--173514	22	2.1	23	88	7	71	20	4	0	75	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173419--173520	31	3.4	29	74	19	86	19	4	0	74	1.06
173542--173601	31	1.9	32	83	10	79	23	8	1	66	1.28
180390--180458	20	3.4	20	80	6	77	0	36	1	62	1.04
180742--180776	14	2.5	14	90	9	54	20	20	42	17	1.89
182603--182628	1	26.0	1	100	0	52	100	0	0	0	0.00
184373--184558	100	1.9	101	96	1	347	29	16	18	36	1.93
185856--185960	37	2.8	37	85	0	138	40	15	15	29	1.88
186567--186641	2	37.5	2	100	0	150	49	0	0	50	1.00
186723--186811	29	2.8	31	75	13	92	23	1	7	67	1.24
186784--186819	18	1.9	19	88	5	56	30	2	2	63	1.22
186856--186884	2	14.5	2	100	0	58	48	0	0	51	1.00
191391--191461	8	8.8	8	76	14	65	80	4	15	0	0.86
191391--191483	12	7.9	12	71	20	56	79	5	13	1	0.96
191391--191483	19	4.8	19	75	13	66	79	5	13	1	0.96
191394--191469	30	2.4	32	85	10	95	80	5	14	0	0.88
193113--194093	106	9.3	106	88	2	1395	33	23	18	23	1.97
194777--194876	37	2.8	36	81	4	121	42	16	11	31	1.82
195398--195444	18	2.5	18	80	13	51	31	4	0	63	1.13
195631--195686	12	5.2	11	75	16	55	30	1	3	64	1.21
195723--195803	12	6.4	13	67	16	53	18	9	0	71	1.13
195738--195779	16	2.6	16	88	7	59	16	7	0	76	1.00
199350--199600	43	5.8	43	78	5	141	29	16	22	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199392--199748	43	8.3	43	80	3	360	24	16	23	35	1.95
199751--199866	43	2.8	40	77	11	115	33	15	21	29	1.94
200616--200725	22	5.0	22	79	10	118	16	24	38	20	1.93
204075--204141	20	3.3	21	85	6	102	13	25	44	16	1.84
204075--204139	21	3.3	19	82	8	67	12	26	44	16	1.83
204075--204155	20	4.1	20	78	9	85	13	28	40	17	1.87
204682--204742	21	2.9	21	72	0	59	4	34	16	44	1.69
213235--213353	42	2.9	42	79	8	109	36	17	13	31	1.89
213262--213353	42	2.2	42	84	5	116	36	20	11	30	1.89
213270--213595	134	2.4	134	86	2	415	34	17	15	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11