genome.fa.s8164.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008164.1 Hibiscus syriacus cultivar Beakdansim tig00110744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2577652

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1563846--1564357	46	11.1	46	90	1	749	21	22	10	45	1.83
1563873--1563963	26	3.7	26	74	16	104	20	23	10	45	1.83
1564716--1564774	19	2.9	20	76	11	66	32	20	11	35	1.89
1570436--1570478	22	2.0	22	95	0	77	46	18	18	16	1.84
1571734--1571785	22	2.4	21	75	18	54	36	3	1	57	1.28
1572114--1572265	76	2.0	76	84	6	200	37	13	5	44	1.66
1576673--1576867	104	1.9	104	83	2	257	29	18	18	33	1.95
1579190--1579216	4	6.8	4	100	0	54	77	0	0	22	0.76
1581736--1581781	20	2.3	20	100	0	92	28	6	28	36	1.82
1584420--1584444	12	2.1	12	100	0	50	40	36	8	16	1.77
1588902--1588926	12	2.1	12	100	0	50	40	36	8	16	1.77
1590641--1590673	16	2.1	16	100	0	66	24	24	12	39	1.89
1605595--1605655	30	2.1	28	88	11	88	26	4	31	37	1.77
1605599--1605655	31	2.0	27	83	16	71	26	3	33	36	1.74
1607996--1608028	2	16.5	2	100	0	66	48	0	0	51	1.00
1615614--1615657	20	2.2	20	91	0	70	50	15	15	18	1.79
1615671--1615732	25	2.5	25	81	0	70	37	20	17	24	1.94
1622551--1622596	21	2.2	21	96	3	85	28	17	10	43	1.82
1622900--1622945	21	2.2	21	84	3	58	43	10	8	36	1.71
1622949--1623029	20	4.1	20	82	4	101	49	12	12	25	1.75
1623430--1623483	21	2.6	21	96	0	99	42	22	11	24	1.85
1625095--1625131	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625239--1625653	108	3.7	108	74	11	390	32	15	15	36	1.89
1625239--1625743	226	2.2	226	90	3	784	33	15	15	36	1.88
1626685--1626741	23	2.5	22	77	11	60	77	7	1	14	1.06
1626813--1626908	45	2.2	44	81	12	108	73	5	9	11	1.22
1626988--1627040	28	1.9	27	84	3	70	54	3	13	28	1.56
1628028--1628067	15	2.6	16	92	7	66	62	0	5	32	1.17
1628071--1628377	37	8.5	35	68	20	120	46	6	3	44	1.44
1628077--1628186	31	3.4	31	71	19	80	48	5	2	43	1.40
1628133--1628304	73	2.4	69	81	8	184	45	6	3	44	1.47
1628247--1628381	42	3.4	39	79	16	136	46	8	2	42	1.45
1629197--1629758	170	3.3	170	85	2	750	25	18	20	35	1.95
1629215--1629759	256	2.1	255	82	3	666	25	18	20	35	1.96
1629154--1629759	85	7.1	84	78	4	604	25	18	20	35	1.96
1630826--1631078	95	2.7	95	86	4	349	34	17	16	30	1.93
1634714--1634998	13	21.2	13	64	18	79	75	4	5	15	1.15
1634735--1634796	22	3.1	19	78	15	63	80	3	3	12	0.95
1634758--1634796	16	2.4	16	87	8	53	84	2	0	12	0.72
1634733--1634801	18	4.1	16	77	17	61	78	2	2	15	1.00
1634937--1634999	9	6.8	9	80	8	65	77	1	0	20	0.85
1634921--1634998	9	8.2	9	73	9	57	78	5	0	16	0.93
1634937--1634998	18	3.2	19	81	9	72	79	1	0	19	0.82
1636139--1636211	29	2.5	28	82	10	85	50	4	2	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1636191--1636369	37	4.9	36	83	8	195	46	6	2	44	1.42
1636200--1636440	37	6.4	37	77	12	136	46	7	2	43	1.44
1636310--1636445	40	3.5	39	76	16	111	46	8	2	42	1.48
1643479--1643528	20	2.5	20	100	0	100	30	10	28	32	1.89
1643459--1643718	95	2.8	94	79	8	260	32	13	25	28	1.94
1643950--1644287	59	5.7	59	89	2	491	33	10	19	36	1.86
1645819--1645902	40	2.1	40	91	2	134	33	13	23	29	1.93
1647857--1648036	95	1.9	95	85	3	247	33	15	24	26	1.95
1648371--1648828	59	7.8	59	90	0	686	33	12	19	34	1.90
1649544--1650004	59	7.8	59	87	2	615	32	10	20	36	1.87
1652374--1652424	18	2.7	19	78	6	59	31	13	27	27	1.94
1654749--1655239	246	2.0	248	93	1	851	33	21	14	30	1.93
1677846--1677870	8	3.1	8	100	0	50	72	0	0	28	0.86
1685380--1685486	53	2.0	53	87	0	151	28	14	18	38	1.91
1689116--1689163	25	2.0	24	87	4	69	39	12	0	47	1.41
1726304--1726364	23	2.6	24	89	10	99	29	24	24	21	1.99
1733150--1733210	23	2.6	24	86	2	88	27	26	21	24	1.99
1754520--1754569	21	2.5	20	76	3	55	22	20	22	36	1.96
1754651--1754707	23	2.5	23	80	5	62	17	24	22	35	1.95
1764063--1764109	21	2.2	21	100	0	94	36	42	8	12	1.74
1765405--1765564	65	2.5	65	83	7	202	31	16	22	30	1.96
1765386--1765593	65	3.2	64	76	9	176	29	17	22	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1765890--1766000	56	2.0	56	94	1	197	32	24	3	39	1.72
1774118--1774321	65	3.2	63	74	15	188	27	17	24	30	1.97
1782620--1782755	44	3.1	44	90	2	202	30	13	24	31	1.94
1783220--1783296	21	3.7	21	80	10	86	23	16	23	36	1.94
1783350--1783418	23	3.0	23	76	4	77	17	24	26	31	1.97
1785336--1785409	32	2.3	32	83	4	87	25	24	29	20	1.99
1794644--1794800	32	5.0	32	86	2	165	26	28	25	19	1.98
1794650--1794768	63	1.9	63	84	3	159	25	29	26	19	1.98
1796940--1796989	13	3.8	13	94	0	91	40	18	22	20	1.92
1823916--1823957	21	2.2	19	84	16	52	28	19	21	30	1.97
1824300--1824343	20	2.2	20	88	4	63	54	4	4	36	1.41
1824435--1824470	12	2.8	13	87	8	56	38	5	8	47	1.57
1827475--1827507	9	3.8	9	92	4	50	57	0	3	39	1.14
1827690--1827993	73	4.1	74	75	8	310	25	20	20	33	1.97
1827690--1827995	37	8.2	37	77	7	285	25	20	20	33	1.97
1827986--1828113	42	3.1	40	81	8	125	32	20	18	28	1.96
1828054--1828115	20	3.1	19	70	17	61	29	22	17	30	1.97
1828258--1828364	42	2.6	41	76	2	115	29	20	22	27	1.98
1828217--1828864	225	2.9	225	92	0	1021	32	18	17	31	1.94
1830126--1830380	125	2.0	125	86	0	357	25	26	16	32	1.96
1835397--1835447	17	3.1	16	78	10	50	72	1	9	15	1.19
1837886--1837911	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839460--1839492	9	3.8	9	92	4	50	57	0	3	39	1.14
1839999--1840048	17	2.9	18	88	8	68	36	6	28	30	1.81
1840454--1840889	244	1.8	236	85	7	606	40	17	12	29	1.86
1841489--1841533	15	3.0	15	96	0	81	42	24	6	26	1.79
1842686--1842710	13	1.9	13	100	0	50	32	16	24	28	1.96
1847002--1847044	18	2.4	18	80	7	52	0	34	6	58	1.25
1847403--1847469	31	2.2	31	91	0	107	29	25	14	29	1.95
1848472--1848518	18	2.6	19	80	10	62	25	17	31	25	1.97
1851927--1852005	32	2.5	32	85	0	104	15	31	27	25	1.95
1852799--1852851	23	2.3	23	84	9	65	64	1	18	15	1.38
1852858--1852912	28	2.0	28	85	7	76	74	3	3	18	1.11
1852854--1852947	42	2.1	44	80	7	102	71	3	7	18	1.23
1853429--1853464	17	2.2	16	90	9	56	77	5	11	5	1.10
1854463--1854626	43	3.8	43	76	0	157	24	22	23	29	1.99
1854448--1854626	86	2.1	87	84	1	234	25	21	22	30	1.99
1864381--1864411	2	15.5	2	93	0	53	48	0	3	48	1.17
1864476--1864540	32	2.0	32	96	0	121	20	13	24	41	1.88
1865387--1865421	17	2.1	17	88	0	52	54	0	2	42	1.15
1867731--1867771	17	2.4	17	88	8	57	48	4	2	43	1.37
1870378--1870417	21	1.9	21	85	10	55	37	0	10	52	1.35
1871595--1871867	47	5.9	45	83	7	327	22	2	6	67	1.29
1871586--1871857	140	2.0	137	85	6	370	22	3	7	66	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1874970--1875004	16	2.2	16	90	10	54	74	0	0	25	0.82
1879766--1879798	3	11.0	3	87	12	50	30	36	0	33	1.58
1886196--1886226	15	2.1	15	94	5	55	45	6	0	48	1.28
1887618--1887655	10	3.8	10	89	0	58	31	28	0	39	1.57
1887835--1887957	53	2.6	48	78	17	139	36	1	11	50	1.48
1887856--1887939	26	3.2	26	66	21	66	40	2	10	46	1.52
1889446--1889490	18	2.5	18	85	0	63	26	31	20	22	1.98
1889961--1890032	26	3.0	24	68	27	62	26	6	4	62	1.39
1893427--1893455	12	2.3	13	94	5	51	62	6	3	27	1.37
1894246--1894303	21	2.8	21	78	17	66	72	3	1	22	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11