genome.fa.s8164.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008164.1 Hibiscus syriacus cultivar Beakdansim tig00110744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2577652

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466109--466161	22	2.4	22	75	6	54	39	11	24	24	1.88
466669--466742	16	4.7	16	80	6	71	31	9	5	54	1.55
466669--466718	25	2.0	25	88	0	73	34	8	6	52	1.55
466891--466922	2	16.5	2	93	6	57	46	0	0	53	1.00
467174--467315	55	2.6	55	95	0	257	37	5	9	47	1.61
468581--468804	95	2.4	95	86	3	299	37	15	22	25	1.93
469712--469968	68	3.8	68	91	0	379	29	14	25	30	1.95
469854--470149	149	2.0	149	88	1	441	32	13	24	29	1.93
470245--470283	20	2.0	20	85	10	53	46	0	23	30	1.53
474609--475000	68	5.8	68	85	2	527	31	14	23	30	1.94
474609--475365	216	3.6	208	84	3	772	32	13	23	30	1.93
474612--475216	136	4.4	136	80	8	680	32	14	23	30	1.94
474815--475527	216	3.2	217	85	4	876	34	13	23	29	1.93
475032--475234	68	3.0	68	88	0	282	30	14	25	30	1.95
475099--475626	149	3.5	148	77	8	515	35	12	22	29	1.91
475248--475383	68	2.0	68	79	2	148	30	13	23	31	1.94
475316--475557	81	3.0	81	90	0	358	38	11	22	26	1.89
475316--475637	81	4.0	81	82	5	330	39	10	22	27	1.87
475316--475637	162	2.0	162	80	4	364	39	10	22	27	1.87
475689--475715	2	13.5	2	100	0	54	51	0	0	48	1.00
478769--478805	20	2.0	20	89	10	60	43	10	27	18	1.83
482282--482597	117	2.7	114	89	5	490	22	23	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482744--482793	23	2.2	23	82	7	57	48	0	20	32	1.50
482773--483003	70	3.4	70	75	10	262	35	5	24	33	1.79
482738--483003	133	2.0	133	93	0	460	36	4	24	34	1.77
483001--483031	14	2.2	14	100	0	62	25	0	16	58	1.38
483139--483211	34	2.1	34	89	0	110	38	6	5	49	1.53
483714--483765	21	2.5	21	93	0	95	25	25	32	17	1.97
483741--483830	42	2.1	42	79	0	99	25	18	34	21	1.96
485336--485402	28	2.3	30	77	15	77	58	2	0	38	1.14
485548--485616	30	2.2	31	84	5	86	52	1	0	46	1.09
487316--487550	115	2.0	115	91	0	380	42	11	11	34	1.78
489527--489591	31	2.1	31	91	0	103	33	15	23	27	1.95
490411--490561	13	11.8	13	69	16	66	69	3	3	23	1.20
490786--490838	2	26.5	2	100	0	106	50	0	0	49	1.00
491063--491102	12	3.6	11	87	9	55	65	5	5	25	1.34
491118--491221	22	4.9	21	70	25	60	67	0	4	26	1.17
491180--491224	12	3.7	12	81	3	54	66	0	4	28	1.11
491800--491903	36	2.8	38	84	7	142	30	13	13	42	1.83
492573--494051	106	14.0	106	89	2	2106	23	17	24	34	1.96
494878--494929	22	2.4	21	90	9	86	19	13	28	38	1.89
495523--495591	23	2.9	23	75	12	68	2	13	7	76	1.10
495555--495621	17	3.7	18	73	16	57	1	13	4	80	0.93
495546--495623	21	3.6	22	73	14	56	1	14	5	79	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495533--495624	9	9.9	9	68	15	62	2	13	5	79	1.00
495933--495966	14	2.4	14	90	0	50	38	5	17	38	1.74
496771--496806	8	4.6	8	89	6	56	55	13	16	13	1.69
496771--496806	15	2.3	15	90	4	54	55	13	16	13	1.69
499378--499484	27	4.2	25	70	18	69	71	4	3	19	1.19
499752--499796	2	22.5	2	100	0	90	51	0	0	48	1.00
499991--500047	2	28.5	2	100	0	114	50	0	0	49	1.00
500097--500142	22	2.0	23	87	4	67	69	2	0	28	1.00
500074--500227	61	2.5	59	76	15	145	66	1	7	24	1.26
500775--500875	37	2.7	37	90	0	148	31	15	11	40	1.84
501153--501210	17	3.4	17	71	21	50	34	1	1	62	1.16
501572--501621	19	2.6	19	93	0	82	36	24	6	34	1.80
503117--503341	114	2.0	115	93	0	389	40	17	21	20	1.91
503827--504084	102	2.6	97	82	8	272	41	5	5	47	1.50
504451--504638	84	2.2	84	80	10	195	37	9	6	46	1.62
508162--508270	57	1.9	57	85	7	150	44	4	3	47	1.41
508230--508284	23	2.4	23	79	14	60	47	3	0	49	1.19
510547--510616	25	2.8	25	81	10	81	27	8	31	32	1.87
512413--512457	21	2.3	20	85	11	58	35	22	17	24	1.95
531484--531549	32	2.1	32	88	0	96	31	25	24	18	1.97
535180--535214	16	2.1	16	89	5	52	60	2	0	37	1.12
537197--537242	18	2.4	19	85	7	58	67	0	8	23	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544001--544042	17	2.4	18	88	4	59	69	2	4	23	1.20
548160--548194	2	17.5	2	100	0	70	48	0	0	51	1.00
548404--548584	92	2.0	92	96	0	335	24	34	8	32	1.85
555843--555880	2	19.0	2	100	0	76	50	0	0	50	1.00
565536--565574	18	2.2	18	90	4	62	28	25	17	28	1.98
569684--569724	19	2.2	18	91	4	64	60	0	0	39	0.96
572599--572641	22	2.0	22	81	9	52	53	6	6	32	1.55
572651--572787	67	2.0	67	97	0	256	41	18	12	27	1.87
581435--581517	31	2.7	31	75	17	84	30	14	9	45	1.77
581960--582004	2	22.5	2	100	0	90	48	0	0	51	1.00
583943--583996	27	2.0	27	100	0	108	29	7	22	40	1.81
591017--591090	28	2.8	26	84	10	89	41	1	16	40	1.56
591072--591231	87	1.8	87	82	5	207	36	5	10	47	1.61
591047--591234	29	6.5	28	80	8	182	38	5	10	45	1.62
596196--596256	20	2.9	21	87	7	79	18	26	34	21	1.96
606915--606959	23	2.0	23	82	8	56	44	2	0	53	1.13
607218--607395	60	3.0	60	80	4	191	32	23	6	38	1.80
609853--609902	25	2.0	25	96	0	91	44	26	8	22	1.80
609917--609955	21	2.0	21	85	10	55	53	7	7	30	1.57
613787--613859	39	1.9	38	88	5	112	19	12	8	60	1.57
616142--616182	20	2.0	20	90	0	64	26	9	31	31	1.89
618485--618521	19	1.9	19	94	0	65	32	29	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618547--618702	61	2.5	62	83	3	181	35	22	17	24	1.95
618673--618741	20	3.5	20	89	0	111	28	30	17	23	1.97
618758--618804	21	2.2	21	92	0	76	21	21	29	27	1.98
623743--623833	19	4.4	20	76	17	105	31	27	4	36	1.77
623754--623835	44	1.9	41	87	7	119	34	28	4	32	1.78
627446--627501	19	3.1	19	89	5	89	35	0	16	48	1.46
627572--627612	19	2.1	20	86	4	57	29	2	2	65	1.18
627767--627837	27	2.5	27	81	9	70	61	4	0	33	1.15
630403--630468	29	2.3	28	84	7	80	66	1	3	28	1.15
631408--631506	40	2.4	41	86	3	137	38	21	3	37	1.69
632581--632623	9	4.4	9	78	16	50	20	9	16	53	1.70
633379--633453	38	2.0	37	82	7	89	42	12	1	44	1.50
633445--633496	27	1.9	27	84	0	68	48	19	3	28	1.66
634996--635025	15	2.0	15	100	0	60	33	26	13	26	1.93
635111--635697	263	2.2	256	85	9	808	27	11	19	41	1.86
638519--638582	30	2.1	30	85	0	83	18	9	7	64	1.47
641867--641924	6	10.0	6	74	12	50	75	3	18	1	1.03
641867--641924	17	3.4	17	80	15	66	75	3	18	1	1.03
643584--643777	64	3.0	64	94	0	334	36	22	12	28	1.91
643842--644031	90	2.1	90	88	3	285	31	27	14	26	1.95
644273--644563	129	2.3	130	86	3	392	26	30	16	26	1.97
644375--644568	40	4.6	40	70	13	113	25	30	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651648--651697	2	25.0	2	100	0	100	50	0	0	50	1.00
651800--651866	2	34.0	2	88	8	102	49	2	0	47	1.16
652067--652123	25	2.3	25	75	6	62	35	17	10	36	1.84
656614--656742	65	2.0	66	89	4	199	41	6	20	31	1.79
657938--658405	181	2.6	182	86	2	629	43	12	16	27	1.84
658320--658378	20	3.0	19	78	9	64	54	8	15	22	1.68
660144--660183	20	2.0	21	85	14	57	42	5	7	45	1.54
661220--662108	182	4.9	182	94	1	1545	40	13	17	28	1.87
662257--662419	87	1.9	87	97	0	308	33	12	11	42	1.78
662341--662385	23	2.0	23	86	0	63	37	15	8	37	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11