Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008164.1 Hibiscus syriacus cultivar Beakdansim tig00110744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2577652

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1239 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2491890--2492035
38
3.9
36
76
8
139
25
9
32
32
1.88
2491772--2492050
113
2.5
111
80
5
267
24
8
34
32
1.86
2491860--2492025
75
2.2
74
78
11
178
22
9
33
33
1.87
2509930--2509977
25
2.0
24
87
4
69
29
35
12
22
1.91
2510090--2510162
37
1.9
38
81
13
89
49
0
1
49
1.09
2510080--2510169
42
2.3
38
79
17
112
48
0
1
50
1.08
2517370--2517488
44
2.8
44
94
2
206
69
8
4
17
1.30
2517879--2517932
21
2.6
21
81
0
63
27
14
29
27
1.95
2520124--2520220
4
22.8
4
69
12
50
27
4
3
64
1.26
2520129--2520178
18
2.8
18
96
0
91
26
2
4
68
1.18
2522134--2522181
24
2.0
24
91
0
78
25
0
43
31
1.55
2522973--2523055
28
3.1
28
81
10
109
24
18
4
53
1.64
2528627--2528682
28
2.0
28
85
0
76
35
10
14
39
1.81
2530416--2530893
156
3.0
156
85
3
647
47
6
17
28
1.72
2532693--2532725
16
2.0
17
94
5
59
45
0
0
54
0.99
2534601--2534679
22
3.7
21
73
17
56
43
3
2
50
1.33
2534625--2534679
22
2.5
22
84
0
83
45
1
3
49
1.30
2543226--2543268
22
2.0
22
90
4
70
53
2
2
41
1.26
2543246--2543280
17
2.1
17
88
0
52
48
0
5
45
1.26
2543601--2543691
40
2.3
40
84
0
119
34
18
19
27
1.96
2543655--2544096
41
10.8
41
79
9
420
26
19
18
35
1.95
2543655--2543961
163
1.9
165
85
4
433
26
18
18
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2547408--2547524
40
2.8
43
83
11
136
24
25
18
30
1.98
2548937--2548974
15
2.5
15
95
0
67
42
15
15
26
1.87
2551291--2551657
55
6.7
55
87
2
504
28
24
19
28
1.98
2551668--2551743
37
2.1
37
90
5
118
22
22
17
38
1.93
2553030--2553227
7
26.3
7
72
18
54
10
13
0
76
1.01
2553015--2553220
9
21.9
9
72
18
93
10
12
0
77
1.00
2553022--2553134
43
2.6
42
78
12
113
9
10
0
79
0.93
2553073--2553220
18
8.1
18
74
24
107
11
11
0
77
1.01
2553098--2553214
38
3.1
37
78
15
109
10
11
0
77
0.99
2564661--2564695
2
17.5
2
93
0
61
48
0
2
48
1.16
2565843--2565885
22
2.0
22
100
0
86
32
18
16
32
1.93
2565844--2565891
22
2.2
22
92
0
78
35
18
14
31
1.91
2565848--2565896
22
2.3
21
86
6
64
34
18
12
34
1.88
2570140--2570168
2
14.5
2
100
0
58
51
0
0
48
1.00
2575477--2575632
72
2.1
74
80
5
174
33
19
21
25
1.97
2575987--2576132
56
2.6
57
86
8
194
35
14
15
34
1.88
2575987--2576160
56
3.1
57
80
9
137
37
12
16
33
1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!