genome.fa.s8164.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008164.1 Hibiscus syriacus cultivar Beakdansim tig00110744_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2577652

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1239 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215187--215267	42	1.9	42	89	0	126	24	22	20	32	1.98
215195--215283	42	2.1	42	80	0	97	28	19	17	34	1.95
218890--219042	46	3.3	46	89	3	218	23	18	12	45	1.83
219060--220105	81	12.9	81	88	1	1389	31	21	10	35	1.88
225486--225626	46	3.1	46	90	1	212	24	17	10	47	1.79
225642--226558	81	11.5	80	80	6	599	31	21	9	37	1.86
225927--226597	81	8.3	81	84	1	858	33	21	9	36	1.85
235203--235233	12	2.6	12	100	0	62	35	19	6	38	1.77
237034--237077	22	1.9	22	81	9	52	50	2	0	47	1.13
237122--237177	24	2.5	22	80	11	76	39	1	8	50	1.44
237210--237249	20	2.2	18	86	13	55	52	0	0	47	1.00
237217--237257	21	2.0	20	85	4	55	43	0	0	56	0.99
243020--243172	79	2.0	75	88	5	225	22	16	16	45	1.85
244938--245067	69	1.9	69	85	3	181	33	23	19	23	1.97
245657--245692	13	2.8	13	86	0	54	30	2	5	61	1.33
245655--245732	13	5.5	13	69	21	50	34	3	3	57	1.35
247269--247602	167	2.0	166	87	5	478	29	23	24	23	1.99
248358--248545	15	12.4	15	62	21	54	71	1	9	18	1.20
248634--248707	10	7.6	10	80	17	75	50	14	0	35	1.44
248641--248711	6	12.5	6	86	11	87	50	12	0	36	1.41
248634--248715	16	5.2	16	89	1	112	50	14	0	35	1.44
250946--251156	85	2.5	85	82	8	234	26	16	20	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251218--251433	66	3.4	63	69	18	173	25	17	23	33	1.96
251213--251805	124	4.8	124	86	3	754	25	17	24	33	1.96
251821--251983	64	2.5	64	95	0	290	28	15	22	33	1.95
256981--257035	6	9.2	6	75	15	51	76	1	5	16	1.06
256970--257031	18	3.5	16	79	16	61	75	1	4	17	1.05
256977--257035	24	2.6	23	84	10	77	76	1	5	16	1.05
257174--257206	2	16.5	2	100	0	66	51	0	0	48	1.00
257276--257330	20	2.8	20	76	13	60	76	3	3	16	1.07
257417--257448	2	16.0	2	93	0	55	53	0	0	46	1.00
259787--259841	2	27.5	2	100	0	110	49	0	0	50	1.00
265534--265580	2	24.0	2	83	12	62	48	2	0	48	1.13
265646--265688	17	2.6	17	74	3	52	46	2	6	44	1.43
265863--265896	12	2.8	12	91	8	52	23	0	0	76	0.79
265803--265895	45	2.1	44	78	9	102	32	2	1	64	1.12
268663--268748	29	2.9	32	76	10	85	32	16	6	44	1.74
271850--272044	58	3.0	67	78	14	246	29	15	25	29	1.96
272091--272491	45	9.0	45	91	0	626	39	10	22	27	1.87
273948--273979	16	1.9	17	93	6	57	59	3	6	31	1.38
281779--282110	58	5.8	58	85	3	426	36	12	17	34	1.87
282324--282528	68	3.0	68	91	0	329	31	16	23	28	1.96
282574--283053	45	10.7	45	88	2	660	39	10	22	27	1.87
285307--285373	16	4.3	16	88	3	93	10	10	20	58	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285305--285365	32	1.9	32	93	0	104	8	13	24	54	1.66
285435--285467	16	2.1	16	100	0	66	6	12	24	57	1.57
291907--292053	70	2.1	70	100	0	294	43	9	10	36	1.72
302659--302729	22	3.2	22	83	2	97	33	28	22	15	1.95
303505--303541	18	2.1	17	95	5	65	70	16	5	8	1.30
309712--309766	21	2.7	19	86	13	83	60	10	14	14	1.60
312679--312788	41	2.7	40	80	16	118	29	20	16	34	1.94
312868--313282	190	2.2	187	87	5	584	32	18	17	32	1.94
314625--314731	42	2.5	42	81	3	117	32	13	15	38	1.86
315089--315244	42	3.7	42	75	10	124	29	19	17	33	1.94
317350--317408	4	14.0	4	74	22	50	67	3	3	25	1.21
318252--318321	31	2.3	31	95	2	124	22	11	15	50	1.76
320310--320358	12	4.2	12	79	7	57	38	0	0	61	0.96
320359--320424	3	23.3	3	75	14	52	69	1	3	25	1.11
321644--321700	3	19.3	3	77	16	57	57	0	1	40	1.09
321644--321698	22	2.5	24	77	20	73	58	0	1	40	1.09
321644--321704	20	3.0	21	86	11	83	55	0	1	42	1.09
321866--322579	76	9.4	76	97	0	1320	34	23	19	22	1.96
323433--323487	22	2.5	22	90	0	92	41	12	10	34	1.78
323856--324008	54	2.9	54	78	12	165	26	20	13	39	1.90
324887--325048	76	2.1	75	86	1	216	32	22	14	30	1.94
332464--332516	16	2.9	17	79	17	54	71	0	1	26	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332460--332524	25	2.6	25	83	11	73	70	0	1	27	0.96
334633--334701	3	23.3	3	77	14	72	57	0	0	42	0.98
334633--334687	22	2.5	24	77	20	73	60	0	0	40	0.97
334633--334701	21	3.3	22	88	9	101	57	0	0	42	0.98
338115--338176	32	1.9	32	93	0	106	19	11	11	58	1.62
340402--340451	27	1.9	25	88	8	73	14	18	10	58	1.63
340922--340977	27	2.1	27	83	6	69	32	7	16	44	1.74
342746--342818	36	2.0	36	97	0	137	35	20	24	19	1.95
344549--344599	15	3.5	15	81	7	52	70	3	23	1	1.14
345658--345700	22	2.0	22	85	0	59	27	16	18	37	1.92
345664--345736	37	1.9	38	83	2	94	30	19	12	38	1.88
345864--345956	33	2.8	34	75	9	93	36	19	12	31	1.89
346074--346173	35	2.9	35	76	10	116	32	20	12	36	1.89
346898--346935	12	3.1	12	88	11	51	36	0	0	63	0.95
356954--356996	24	1.9	23	81	13	54	58	2	6	32	1.38
366910--366968	25	2.4	24	83	8	75	40	1	1	55	1.20
372494--372545	20	2.5	21	75	12	54	71	3	1	23	1.13
374451--374627	65	2.8	65	85	5	231	28	12	20	38	1.89
380489--380568	23	3.7	21	77	9	72	26	26	22	25	2.00
382756--382809	21	2.6	21	100	0	108	18	42	24	14	1.88
384971--385176	99	2.1	98	86	3	288	33	16	16	33	1.92
389300--389336	20	1.9	19	89	10	58	45	10	24	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393209--393262	21	2.6	22	77	8	60	46	18	3	31	1.67
394542--394567	13	2.0	13	100	0	52	46	0	30	23	1.53
396790--396834	23	2.0	23	91	4	74	17	17	8	55	1.67
399046--399939	199	4.4	202	78	8	718	34	10	19	35	1.87
407653--407695	2	21.5	2	100	0	86	51	0	0	48	1.00
408797--408862	33	2.1	31	85	5	87	21	0	7	71	1.11
408842--408876	13	2.7	13	86	0	52	22	0	8	68	1.16
410341--410899	162	3.3	170	79	10	562	32	20	16	30	1.95
414913--414961	13	3.8	13	94	0	89	24	24	22	28	1.99
415817--415876	30	2.0	30	83	6	77	21	56	8	13	1.63
421321--421357	16	2.3	16	95	0	65	56	10	2	29	1.47
425080--425113	17	2.1	16	88	5	50	76	0	8	14	1.01
425588--425634	24	2.0	24	83	8	60	57	12	2	27	1.47
425886--425915	15	2.0	15	93	0	51	83	0	16	0	0.65
435768--435814	24	2.0	24	83	8	60	57	12	2	27	1.47
439964--439989	3	8.7	3	100	0	52	69	30	0	0	0.89
440740--440787	18	2.7	18	81	12	62	33	22	20	22	1.97
442329--442487	64	2.5	64	82	6	180	32	13	22	31	1.93
442822--442855	12	2.7	13	86	9	52	35	5	8	50	1.58
444522--444557	14	2.6	14	91	4	56	44	5	16	33	1.71
445034--445147	44	2.6	44	86	4	151	30	21	20	27	1.98
452671--452754	16	5.9	15	71	17	65	36	7	9	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452669--452754	28	3.0	28	82	3	109	37	6	9	46	1.63
452725--452754	14	2.1	14	93	0	51	36	10	6	46	1.64
452777--452920	2	69.5	2	74	16	116	41	6	2	49	1.41
453032--453063	2	16.0	2	100	0	64	50	0	0	50	1.00
453198--453316	56	2.1	55	84	4	150	42	9	5	42	1.61
461887--461932	24	1.9	24	90	0	74	58	10	13	17	1.62
462125--462154	14	2.1	14	100	0	60	66	13	6	13	1.43
463220--463264	2	23.0	2	84	13	58	44	2	2	51	1.26
464009--464117	32	3.4	32	75	5	103	29	25	24	20	1.99
465191--465255	27	2.4	28	84	2	78	26	7	23	43	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11