genome.fa.s8199.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008199.1 Hibiscus syriacus cultivar Beakdansim tig00110819_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2638622

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1254 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2494153--2494386	116	2.0	116	100	0	468	30	15	15	38	1.88
2496396--2496435	20	2.0	20	95	0	71	45	12	5	37	1.64
2496392--2496541	53	2.9	52	95	3	266	47	13	6	32	1.69
2496449--2496488	20	2.0	21	90	5	64	45	15	5	35	1.68
2501575--2501619	20	2.3	20	84	3	56	48	13	4	33	1.62
2501578--2501617	20	2.0	20	90	0	62	45	15	5	35	1.68
2501631--2501670	20	2.0	21	90	5	64	45	15	5	35	1.68
2501684--2501722	20	2.0	20	94	0	69	41	17	5	35	1.72
2501576--2501723	52	2.8	52	93	3	253	48	14	4	32	1.64
2505717--2505780	31	2.0	32	96	3	121	26	31	9	32	1.88
2534668--2534759	47	2.0	45	89	4	139	25	19	15	40	1.90
2535581--2535610	3	10.0	3	100	0	60	33	0	0	66	0.92
2538451--2538480	9	3.2	9	90	9	51	46	23	0	30	1.52
2538452--2538480	10	3.0	10	95	5	51	48	20	0	31	1.50
2540704--2540811	42	2.6	42	93	0	180	19	18	17	44	1.87
2540864--2540891	14	2.0	14	100	0	56	21	21	14	42	1.88
2540989--2541060	31	2.4	31	81	11	87	48	1	0	50	1.09
2540978--2541142	53	3.1	55	73	12	130	48	1	1	49	1.16
2541303--2541371	20	3.5	20	90	2	113	36	14	8	40	1.77
2541303--2541380	40	2.0	39	84	2	102	35	15	7	41	1.76
2541354--2541435	15	5.5	15	86	2	112	35	18	7	39	1.78
2541354--2541435	30	2.8	30	92	5	132	35	18	7	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2541354--2541440	45	2.0	44	90	2	138	33	18	6	41	1.77
2541802--2541869	7	9.7	7	84	6	84	42	36	0	20	1.52
2541802--2541947	14	10.4	14	70	2	78	42	34	0	22	1.59
2541802--2541947	28	5.2	28	73	8	100	42	34	0	22	1.59
2551585--2551621	18	2.0	19	89	5	58	2	29	0	67	1.04
2563095--2563137	15	2.8	15	96	3	77	20	27	27	23	1.99
2579106--2579211	50	2.1	50	100	0	212	36	14	13	35	1.85
2586963--2587004	17	2.5	17	84	3	59	57	2	0	40	1.12
2586964--2587010	18	2.8	16	78	15	51	55	4	0	40	1.19
2587375--2587401	13	2.1	13	100	0	54	14	22	29	33	1.94
2594121--2594158	20	1.9	20	88	0	58	26	36	26	10	1.89
2598114--2598190	31	2.5	31	84	2	100	15	27	29	27	1.96
2601782--2601862	32	2.6	32	80	2	92	16	29	30	23	1.96
2601778--2601862	31	2.7	30	78	8	89	15	29	29	25	1.96
2610284--2610324	5	8.2	5	100	0	82	19	0	58	21	1.39
2613839--2613884	24	1.9	24	95	0	83	26	6	30	36	1.82
2621089--2621172	21	3.9	21	77	10	80	22	34	25	17	1.96
2627986--2628055	2	36.0	2	94	5	126	50	0	0	50	1.00
2631463--2631579	34	3.6	34	74	21	131	42	11	12	33	1.78
2631853--2631914	23	2.8	22	75	20	58	20	6	4	67	1.32
2631868--2631913	24	2.0	23	83	12	58	19	6	4	69	1.28
2631961--2632063	32	3.3	32	79	15	94	26	1	0	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2631904--2632044	39	3.8	39	72	14	111	30	2	1	65	1.12
2631972--2632072	13	7.9	13	67	15	50	25	2	0	70	1.08
2636115--2636463	182	1.9	183	94	0	619	27	21	20	30	1.98
2637752--2637822	36	2.0	36	88	5	108	26	19	14	39	1.90
2637650--2637950	100	3.0	102	92	3	484	30	18	13	36	1.90
2637838--2638086	36	7.4	35	74	16	140	30	18	12	38	1.87
2637905--2637963	30	2.0	30	86	6	84	40	16	10	32	1.82
2637976--2638086	37	3.1	35	81	10	136	30	20	11	36	1.89
2638124--2638238	33	3.5	33	89	5	162	37	19	11	32	1.87
2638193--2638374	67	2.8	66	85	1	240	28	20	12	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!