genome.fa.s8199.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008199.1 Hibiscus syriacus cultivar Beakdansim tig00110819_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2638622

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1254 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304403--304442	21	1.9	21	94	0	71	35	30	7	27	1.84
304548--304596	19	2.6	19	83	0	62	38	14	8	38	1.76
304564--304613	19	2.6	19	90	0	82	40	12	6	42	1.67
304678--304735	30	2.0	30	90	10	93	41	15	5	37	1.70
314653--314974	163	2.0	164	89	0	502	40	17	21	21	1.92
321761--321787	13	2.1	13	100	0	54	22	14	0	62	1.31
325685--326011	162	2.0	163	85	1	442	40	18	20	21	1.92
327330--327655	165	2.0	163	87	3	467	40	17	19	22	1.92
328685--329232	274	2.0	270	94	4	969	37	19	13	29	1.89
330705--331251	272	2.0	271	95	3	985	38	19	13	29	1.90
343558--343631	36	2.1	36	92	0	121	33	22	16	27	1.95
344473--344534	26	2.3	26	75	2	61	40	8	1	50	1.42
351444--351512	23	3.0	24	78	8	88	30	26	26	17	1.97
352930--352974	21	2.1	21	91	0	72	15	22	28	33	1.95
362653--362715	23	2.8	23	80	2	56	36	1	4	57	1.30
362699--362729	16	1.9	16	93	0	53	35	0	3	61	1.12
363549--363573	2	12.5	2	100	0	50	52	0	0	48	1.00
365786--365821	2	18.0	2	100	0	72	50	0	0	50	1.00
369503--369656	82	1.9	82	80	8	179	33	16	22	27	1.95
375301--375468	42	3.9	41	78	11	128	33	19	17	29	1.95
375301--375424	42	2.9	43	83	7	137	36	19	16	27	1.93
380566--380592	14	1.9	14	100	0	54	51	7	7	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387845--387891	22	2.1	22	96	0	85	40	8	2	48	1.45
392023--392100	31	2.5	31	85	0	102	34	10	25	29	1.89
392956--393038	30	2.8	30	83	5	114	30	24	10	34	1.89
396580--396660	27	3.2	26	70	22	73	14	13	18	53	1.73
396576--396669	49	1.9	49	82	4	118	17	12	18	52	1.75
396668--396709	21	2.0	21	85	4	57	52	0	11	35	1.38
399099--399948	56	15.2	56	92	1	1312	44	22	14	18	1.86
399819--399910	31	3.2	31	63	28	83	44	21	16	17	1.86
401105--401215	21	5.3	21	95	0	204	9	23	27	38	1.86
411977--412010	17	2.0	17	100	0	68	29	0	41	29	1.57
417875--417909	16	2.1	17	94	5	63	31	8	25	34	1.86
418659--418691	15	2.1	16	88	5	50	54	12	24	9	1.66
423892--423936	22	2.0	22	100	0	90	44	15	4	35	1.67
433455--433501	20	2.4	19	79	10	58	53	12	14	19	1.73
433243--433715	181	2.6	182	89	1	671	42	14	15	27	1.86
435802--435830	15	1.9	15	100	0	58	20	6	55	17	1.65
435992--436057	33	2.0	33	84	0	87	28	0	48	22	1.51
437847--437895	19	2.6	19	96	0	89	32	2	10	55	1.45
438129--439286	200	5.8	200	94	0	1973	36	14	18	30	1.91
442056--442460	183	2.2	183	96	0	747	34	14	16	34	1.89
442338--442580	120	2.0	120	95	0	432	32	13	15	38	1.86
442151--443048	303	3.0	302	96	0	1643	34	14	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442637--442883	120	2.1	120	94	0	431	31	13	16	38	1.87
445678--445722	22	2.0	22	83	8	56	42	11	8	37	1.72
445740--445812	23	3.2	23	92	0	119	34	5	21	38	1.77
446238--446297	31	1.9	31	96	0	111	38	6	20	35	1.79
446269--446315	23	2.1	22	84	7	60	34	4	21	40	1.73
445553--446716	497	2.4	490	93	2	1944	42	7	10	39	1.67
446786--446833	23	2.1	23	84	0	60	37	14	8	39	1.76
461068--461093	13	2.0	13	100	0	52	0	15	0	84	0.62
464646--464769	31	4.0	31	76	5	124	32	20	18	29	1.96
464644--464767	62	2.0	62	87	4	178	31	20	18	29	1.97
476427--476471	19	2.4	19	85	7	56	66	8	0	24	1.20
479884--479910	13	2.1	13	100	0	54	22	25	14	37	1.93
484507--484549	20	2.2	20	91	0	68	34	20	11	32	1.89
494180--494220	20	2.2	20	91	8	68	46	9	21	21	1.80
501132--501633	182	2.8	180	89	3	755	44	11	15	28	1.80
503508--503563	24	2.5	22	77	13	60	39	0	8	51	1.33
504544--504579	17	2.1	17	100	0	72	50	8	11	30	1.67
505551--505599	18	2.7	18	93	3	80	30	2	10	57	1.43
506038--506631	195	3.1	196	89	4	875	37	16	15	31	1.89
507034--507069	13	2.6	14	86	13	56	16	50	0	33	1.46
508566--508632	22	3.0	22	95	2	116	25	28	26	19	1.99
513424--513490	22	3.0	22	95	2	116	25	28	26	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515181--515225	21	2.1	21	87	0	63	15	24	28	31	1.96
516218--516252	12	2.9	12	91	0	52	40	2	31	25	1.70
517510--518085	201	2.9	198	82	4	685	37	17	14	31	1.89
521254--521738	196	2.4	195	79	9	475	38	14	16	30	1.88
521856--521900	23	2.0	23	90	0	72	37	17	8	35	1.81
521772--521934	87	1.9	87	96	0	299	30	15	12	41	1.85
522210--522307	31	3.2	31	88	2	144	39	11	23	25	1.88
522746--522800	27	2.0	27	82	6	67	54	3	9	32	1.49
524217--524275	31	1.9	31	89	0	91	38	11	23	25	1.89
525429--525466	20	1.9	20	88	0	58	57	2	10	28	1.45
525424--525472	20	2.5	20	78	15	57	61	6	8	24	1.47
525411--525672	119	2.2	119	94	2	458	61	4	8	25	1.45
525542--525585	20	2.1	21	87	4	63	61	2	9	27	1.38
525547--525591	20	2.3	19	81	11	54	62	4	8	24	1.43
525682--525728	25	2.0	24	87	8	69	65	0	2	31	1.04
525606--525710	40	2.7	39	70	12	90	64	2	6	25	1.32
526555--526609	26	2.1	26	100	0	110	10	20	14	54	1.69
527566--527594	2	14.5	2	100	0	58	51	0	0	48	1.00
531306--531350	2	22.5	2	100	0	90	48	0	0	51	1.00
532601--532659	21	2.8	21	80	12	66	33	15	8	42	1.77
534159--534202	22	2.0	22	100	0	88	18	4	45	31	1.69
534832--534903	23	3.2	23	88	4	110	38	22	5	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535268--535330	23	2.7	23	92	0	99	38	20	4	36	1.74
534669--536819	430	5.0	430	96	1	3931	39	12	7	40	1.71
535688--535760	23	3.2	23	92	0	119	38	21	5	34	1.77
536118--536190	23	3.2	23	78	7	85	39	20	4	35	1.72
536546--536617	23	3.2	23	90	4	110	38	20	5	34	1.76
536954--537017	24	2.7	24	92	4	103	39	10	10	39	1.76
540797--540868	3	24.0	3	76	0	72	23	33	6	36	1.82
540804--540885	36	2.3	36	91	0	128	20	32	8	37	1.83
540798--540885	12	7.3	12	85	0	95	21	32	7	37	1.83
540822--540885	18	3.6	18	75	8	67	18	32	9	39	1.83
542348--543324	401	2.4	402	97	0	1850	30	17	14	37	1.90
542348--543324	201	4.9	200	97	0	1837	30	17	14	37	1.90
543417--543464	19	2.6	19	93	3	80	54	10	2	33	1.46
545343--545407	21	3.1	21	93	0	103	16	30	7	44	1.76
547623--547669	20	2.4	19	79	10	58	21	17	8	53	1.70
547806--547857	19	2.7	19	85	8	52	19	17	13	50	1.78
547590--548060	179	2.6	182	87	2	671	27	17	13	41	1.87
549891--549975	29	2.9	29	83	0	116	15	28	14	42	1.85
563568--563651	29	3.0	28	81	6	98	15	25	14	45	1.84
578674--578703	15	2.0	15	93	0	51	33	0	3	63	1.11
579260--579310	7	7.7	7	80	8	54	21	0	1	76	0.88
579261--579302	18	2.2	18	87	8	57	21	0	2	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579261--579327	6	10.8	6	76	19	50	23	0	1	74	0.90
583695--583725	2	15.5	2	100	0	62	48	0	0	51	1.00
583966--584009	16	2.8	16	86	3	54	11	13	6	68	1.39
583998--584050	27	1.9	27	85	11	72	11	16	1	69	1.26
587785--587966	95	1.9	95	87	0	265	32	18	18	30	1.94
589918--589999	36	2.3	36	91	4	139	25	20	13	40	1.89
590100--590261	64	2.5	64	91	2	252	29	19	10	40	1.85
590013--590297	36	8.4	36	65	17	135	27	18	11	42	1.85
590227--590295	34	2.0	34	82	0	84	24	20	14	40	1.90
590867--590913	10	4.6	10	78	10	51	51	0	2	46	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11