genome.fa.s8199.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008199.1 Hibiscus syriacus cultivar Beakdansim tig00110819_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2638622

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1254 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1829289--1829406	21	5.6	21	72	15	100	21	19	22	36	1.95
1829295--1829434	42	3.3	42	94	0	244	22	18	21	37	1.94
1829314--1829427	21	5.4	21	71	15	101	21	17	21	39	1.92
1829539--1829580	5	8.6	5	86	2	59	35	19	42	2	1.64
1830280--1830463	42	4.5	42	88	4	268	38	21	19	21	1.94
1830279--1830463	21	9.0	21	72	14	129	37	21	19	21	1.94
1830280--1830463	82	2.2	83	89	3	275	38	21	19	21	1.94
1830459--1830511	21	2.5	21	78	0	61	22	16	28	32	1.96
1831762--1831807	21	2.2	21	92	3	76	17	26	39	17	1.91
1834422--1834482	21	2.9	21	79	13	72	11	24	39	24	1.88
1841248--1841297	19	2.6	19	96	0	91	40	4	16	40	1.67
1841311--1841362	20	2.6	20	84	0	68	36	15	17	30	1.91
1841377--1841419	21	2.0	22	95	4	79	32	18	25	23	1.97
1842043--1842105	32	2.0	32	93	0	108	33	22	17	26	1.96
1842482--1842507	2	13.0	2	100	0	52	50	0	0	50	1.00
1860064--1860110	13	4.0	12	78	15	53	70	4	2	23	1.16
1861692--1861777	31	2.8	31	81	0	100	29	24	12	33	1.92
1863263--1863827	6	94.8	6	97	1	967	47	16	2	33	1.61
1872377--1872422	18	2.6	18	80	19	60	41	2	0	56	1.11
1877320--1877358	16	2.4	16	91	0	60	30	17	25	25	1.97
1881367--1881408	21	2.0	20	86	4	57	40	7	14	38	1.73
1883695--1883782	37	2.4	36	83	7	106	48	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1884318--1884358	20	2.0	20	86	9	57	41	9	0	48	1.36
1892271--1892310	20	2.0	20	95	0	71	20	32	25	22	1.98
1892271--1892332	23	2.9	21	85	7	81	20	33	25	19	1.96
1898283--1898317	17	2.1	17	100	0	70	28	11	5	54	1.59
1898517--1898566	27	1.9	27	84	8	68	30	14	12	44	1.81
1898615--1898654	19	2.1	19	100	0	80	30	20	20	30	1.97
1904301--1904330	2	15.0	2	100	0	60	50	0	0	50	1.00
1906746--1906854	21	5.2	21	65	4	58	51	6	11	31	1.62
1911824--1911909	25	3.4	25	96	3	156	47	3	15	33	1.62
1912104--1912164	30	2.0	30	96	0	113	37	14	13	34	1.85
1913157--1913212	26	2.2	26	81	12	62	44	8	1	44	1.45
1913346--1913400	23	2.4	21	77	16	56	52	3	0	43	1.18
1913362--1913408	21	2.1	23	84	7	62	48	0	0	51	1.00
1913517--1913561	24	1.9	23	82	13	56	46	2	0	51	1.13
1917893--1917933	17	2.5	16	85	14	57	43	2	0	53	1.13
1919022--1919354	111	3.0	111	95	0	603	36	8	10	45	1.69
1942413--1942521	31	3.5	31	80	1	119	43	17	17	22	1.88
1944285--1944337	21	2.5	21	81	6	72	20	26	18	33	1.96
1944348--1944399	21	2.5	21	90	0	86	34	19	25	21	1.96
1944385--1944522	41	3.4	41	81	6	145	36	26	15	21	1.94
1944388--1944502	20	5.7	20	83	6	124	33	27	16	21	1.95
1944691--1944739	22	2.3	21	89	6	73	20	38	14	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1944995--1945053	20	3.0	20	87	0	73	15	18	22	44	1.87
1945190--1945244	25	2.2	24	78	15	58	20	9	18	52	1.71
1946664--1946709	20	2.3	20	84	0	56	36	23	21	17	1.94
1946675--1946719	20	2.3	20	88	3	74	37	17	24	20	1.93
1946683--1946799	19	6.6	19	73	19	101	43	21	21	13	1.87
1946719--1946777	14	3.9	14	76	20	64	49	23	16	10	1.77
1946703--1946794	33	2.8	33	98	0	175	47	21	18	11	1.80
1946806--1946871	19	3.7	19	71	19	70	10	19	22	46	1.80
1946856--1946930	20	3.8	20	92	1	116	16	26	24	33	1.95
1946901--1946956	20	2.8	20	88	0	76	23	16	28	32	1.96
1946857--1946950	40	2.4	40	82	5	102	18	22	25	34	1.96
1947295--1947384	40	2.2	42	84	4	121	21	40	15	23	1.91
1948792--1948830	14	2.8	14	84	0	51	35	0	17	46	1.49
1948962--1949007	19	2.4	19	88	0	65	54	17	13	15	1.71
1948974--1949014	19	2.2	19	86	0	55	56	14	17	12	1.68
1949293--1949369	20	3.8	20	87	0	100	29	20	23	25	1.99
1949283--1949370	20	4.4	20	85	0	95	28	19	22	29	1.98
1949359--1949410	20	2.5	20	81	3	59	21	21	17	40	1.91
1952619--1952660	18	2.3	19	84	12	61	40	7	4	47	1.52
1957541--1957632	42	2.2	42	82	3	105	22	16	34	26	1.95
1957552--1957663	42	2.7	42	77	5	111	23	16	37	22	1.94
1958144--1958231	20	4.4	20	94	0	122	34	23	20	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958280--1958327	20	2.4	20	100	0	96	35	18	16	29	1.93
1958280--1958379	20	5.3	20	77	13	77	24	19	20	37	1.94
1960688--1960751	22	2.9	22	83	0	83	25	15	35	23	1.94
1960947--1961099	20	7.7	20	92	0	234	19	18	20	41	1.91
1962725--1962760	14	2.6	14	90	0	54	30	0	22	47	1.52
1962877--1962961	33	2.5	34	88	1	118	45	18	21	14	1.84
1962965--1963033	20	3.5	20	91	0	111	17	20	26	36	1.94
1966345--1966411	20	3.3	20	87	0	98	25	19	25	29	1.98
1966398--1966490	20	4.7	20	97	0	168	20	20	20	38	1.93
1966487--1966547	21	2.9	21	83	9	79	42	14	21	21	1.88
1969754--1969794	16	2.6	16	84	0	55	56	4	2	36	1.34
1974224--1974325	34	2.9	36	89	5	163	44	13	13	28	1.82
1974897--1974931	16	2.1	18	89	10	56	25	8	0	65	1.21
1975027--1975077	18	2.9	18	75	13	52	23	7	1	66	1.28
1974861--1975250	193	2.0	192	99	0	771	22	7	5	64	1.41
1975090--1975124	16	2.1	18	89	10	56	25	8	0	65	1.21
1976377--1976404	5	5.6	5	100	0	56	17	0	0	82	0.68
1978298--1978381	17	5.1	16	73	19	59	77	8	14	0	0.99
1978321--1978371	23	2.2	23	82	6	59	80	7	11	0	0.90
1979008--1979070	29	2.2	29	100	0	126	28	33	14	23	1.94
1979976--1980298	36	9.2	36	77	10	204	26	19	15	38	1.91
1979976--1980298	72	4.6	72	75	9	256	26	19	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1980017--1980298	36	8.0	36	78	8	303	25	19	14	40	1.89
1980037--1980364	138	2.4	137	82	2	424	28	20	12	39	1.89
1980273--1980429	66	2.4	66	84	3	208	32	22	8	35	1.86
1981072--1982113	105	10.0	105	92	1	1599	33	26	17	22	1.96
1982661--1982762	34	2.9	36	89	5	163	44	13	13	28	1.82
1983294--1983331	20	1.9	20	88	0	58	26	7	2	63	1.35
1983342--1983376	16	2.1	18	89	10	56	25	8	0	65	1.21
1983305--1983695	193	2.0	193	100	0	782	21	7	5	64	1.40
1983472--1983522	18	2.9	18	75	13	52	23	7	1	66	1.28
1983535--1983569	16	2.1	18	89	10	56	25	8	0	65	1.21
1984108--1984137	15	2.1	14	93	6	51	70	0	0	30	0.88
1988581--1988632	26	2.0	26	100	0	104	34	30	11	23	1.90
1990741--1990788	8	6.4	7	95	4	53	47	0	0	52	1.00
1990746--1990789	2	22.5	2	95	4	81	50	0	0	50	1.00
1991744--1991851	47	2.3	47	98	0	207	19	20	23	37	1.95
1991833--1991918	32	2.7	32	90	0	136	8	25	30	36	1.85
1994169--1994532	14	27.8	14	70	17	257	40	4	5	49	1.46
1994194--1994452	37	6.9	37	92	4	439	40	3	5	50	1.42
1997037--1997062	13	2.0	13	100	0	52	53	23	0	23	1.46
1997300--1997378	33	2.5	33	87	6	110	39	26	22	11	1.88
1997418--1997456	20	2.0	20	94	0	69	17	43	12	25	1.85
1997837--1997935	40	2.5	38	78	12	110	27	20	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2008571--2009019	229	2.0	226	93	2	774	45	7	6	39	1.60
2009085--2009149	20	3.2	20	95	4	114	53	12	16	16	1.72
2009272--2009318	20	2.4	19	89	10	76	55	10	17	17	1.69
2009276--2009323	20	2.6	18	84	15	62	56	10	14	18	1.66
2011540--2011604	21	3.1	21	80	6	69	40	15	29	15	1.88
2011637--2011702	33	2.0	33	90	0	105	28	0	48	22	1.51
2015208--2015272	25	2.6	25	80	0	85	35	9	13	41	1.77
2015557--2015615	23	2.7	23	86	5	77	35	6	20	37	1.79
2015581--2015632	21	2.5	21	84	6	61	36	1	21	40	1.64
2015893--2015943	25	2.0	25	92	0	84	33	7	19	39	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11