genome.fa.s8199.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008199.1 Hibiscus syriacus cultivar Beakdansim tig00110819_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2638622

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1254 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592490--592526	2	19.0	2	94	5	67	48	0	0	51	1.00
597072--597126	26	2.1	26	100	0	110	40	12	10	36	1.79
608080--608256	89	2.0	91	82	9	220	33	10	14	41	1.81
609649--609673	2	12.5	2	100	0	50	52	0	0	48	1.00
610863--610955	20	4.7	19	76	9	62	16	16	23	44	1.86
610873--610945	20	3.7	20	83	1	85	15	17	24	42	1.88
612535--612579	21	2.1	21	83	0	54	17	20	28	33	1.95
612860--612908	20	2.5	20	89	0	71	34	24	20	20	1.96
612955--612997	19	2.3	19	84	8	52	16	16	23	44	1.86
612960--612998	19	2.0	20	90	5	62	12	15	20	51	1.76
613004--613051	20	2.4	20	92	0	78	18	18	27	35	1.95
613019--613081	20	3.2	20	88	0	81	14	15	23	46	1.83
613558--613651	21	4.5	21	72	5	73	21	36	17	25	1.94
613558--613679	42	2.9	42	77	8	131	22	35	18	23	1.96
615202--615279	20	3.9	20	81	6	86	43	24	17	14	1.86
615202--615279	40	2.0	40	84	5	104	43	24	17	14	1.86
615269--615434	20	8.6	20	79	8	166	27	20	19	32	1.97
615605--615639	18	1.9	18	94	0	61	17	2	25	54	1.57
617888--617941	24	2.2	24	93	0	90	40	20	18	20	1.91
617888--617955	24	2.8	24	84	0	64	38	20	17	23	1.93
618596--618633	17	2.2	17	100	0	76	26	5	36	31	1.79
618593--618643	17	2.6	20	76	23	63	25	7	39	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618780--618846	20	3.3	20	73	8	64	25	17	25	31	1.97
629064--629100	18	2.2	17	90	9	58	54	10	5	29	1.57
631332--631385	11	4.9	11	75	8	56	74	1	9	14	1.15
631532--631567	18	2.0	18	89	10	56	50	5	2	41	1.40
634133--634187	3	18.7	3	96	3	103	30	0	0	69	0.89
634875--634899	13	1.9	13	100	0	50	16	0	16	68	1.22
645100--645135	18	2.0	18	100	0	72	33	16	27	22	1.95
645167--645203	18	2.1	18	100	0	74	40	5	32	21	1.76
653753--653869	19	6.5	19	69	17	79	35	3	1	59	1.24
653782--653820	14	2.7	14	88	11	53	35	2	5	56	1.35
653742--653885	71	2.0	70	88	9	213	36	2	2	59	1.24
654209--654239	15	2.1	15	93	0	53	25	6	22	45	1.76
656203--656246	10	4.4	10	82	0	52	15	0	6	77	0.97
656203--656239	19	1.9	20	88	5	58	13	0	8	78	0.96
656600--656642	18	2.3	19	88	8	70	27	4	6	60	1.43
656766--656813	21	2.3	21	81	0	60	39	0	2	58	1.10
658000--658057	28	2.1	27	90	3	89	51	0	1	46	1.11
658003--658077	15	5.0	16	79	14	72	50	1	1	46	1.18
658082--658107	7	3.7	7	100	0	52	30	0	11	57	1.34
658106--658166	31	2.0	31	90	6	97	50	3	4	40	1.40
658167--658228	14	4.4	14	74	11	54	43	1	8	46	1.42
658169--658259	43	2.2	40	88	7	128	46	3	6	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658189--658281	29	3.0	29	70	19	78	48	3	5	43	1.42
658271--658312	22	2.0	21	90	9	68	50	9	4	35	1.56
658300--658352	21	2.5	21	84	0	70	47	7	7	37	1.60
658396--658453	17	3.5	17	69	21	50	48	5	5	41	1.48
658378--658472	33	2.8	33	88	3	127	43	5	6	45	1.52
658363--658486	18	6.7	18	69	12	81	41	5	6	45	1.53
658508--658700	51	3.8	47	73	19	156	44	5	7	42	1.55
658577--658647	2	33.0	2	73	18	54	47	4	4	43	1.42
658577--658647	20	3.5	20	81	9	74	47	4	4	43	1.42
658611--658951	53	6.3	53	74	18	294	42	7	9	41	1.64
658684--658750	33	2.0	33	94	0	116	40	5	10	43	1.63
658728--659032	18	16.2	20	68	20	103	41	7	9	41	1.66
658764--659130	18	20.2	18	67	18	165	42	7	8	41	1.64
658705--658863	80	2.1	75	85	5	210	40	7	9	42	1.66
658825--658917	24	3.8	24	67	20	66	44	8	6	40	1.61
658903--658965	33	1.9	33	93	0	108	41	4	11	42	1.61
658892--658984	33	2.7	33	70	18	82	41	7	8	41	1.64
658916--659088	38	4.6	38	78	16	139	41	8	9	41	1.66
658618--659045	219	2.0	218	87	5	623	42	7	9	40	1.65
659038--659188	33	4.6	32	77	15	132	47	4	6	41	1.50
659104--659191	35	2.4	35	83	7	104	53	2	5	38	1.37
659220--659258	14	2.8	13	85	11	51	48	28	0	23	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659450--659502	2	27.5	2	84	7	74	49	1	0	49	1.12
659427--659497	20	3.6	20	83	5	74	45	2	5	46	1.41
659572--660123	208	2.6	208	89	4	813	28	12	7	51	1.68
663538--663621	21	3.9	21	72	14	73	15	25	35	23	1.94
696727--696776	15	3.4	15	75	10	50	62	2	12	24	1.40
702742--702775	13	2.6	13	85	0	50	70	0	0	29	0.87
702741--702786	19	2.2	22	85	14	62	67	2	0	30	1.03
704795--704826	2	16.0	2	100	0	64	50	0	0	50	1.00
704848--704900	23	2.4	21	84	9	61	7	13	5	73	1.23
704974--705005	15	2.0	17	88	11	50	46	6	15	31	1.71
705520--705560	20	2.1	20	82	13	50	19	4	7	68	1.32
712648--712684	2	18.5	2	100	0	74	48	0	0	51	1.00
719728--719772	22	2.0	22	83	12	56	46	15	8	28	1.76
720694--720756	31	2.0	31	93	0	108	28	31	9	30	1.89
722132--722161	14	2.1	14	93	0	51	23	33	6	36	1.81
725572--725616	22	2.0	22	87	12	65	44	17	8	28	1.79
726558--726583	13	2.0	13	100	0	52	38	0	7	53	1.30
727090--727176	43	2.0	44	86	2	122	29	20	18	31	1.96
728823--729035	41	5.2	40	77	8	191	30	19	19	29	1.97
732206--732241	2	18.0	2	100	0	72	50	0	0	50	1.00
739635--739666	14	2.4	14	90	10	50	37	0	0	62	0.95
740801--740846	21	2.2	21	92	3	76	21	2	8	67	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
740811--740848	11	3.5	11	78	7	51	26	0	10	63	1.27
740799--740847	20	2.5	19	87	9	71	24	2	10	63	1.37
742717--742830	60	1.9	60	87	3	167	31	12	18	37	1.88
744441--744479	19	2.1	19	85	0	51	48	7	0	43	1.31
748945--748972	13	2.2	13	100	0	56	25	21	14	39	1.91
750546--750586	8	5.2	8	82	5	57	34	0	29	36	1.58
750659--751412	128	5.9	128	90	0	1215	23	25	19	31	1.98
751813--751912	33	3.0	34	83	2	139	39	3	4	54	1.35
752423--752516	21	4.5	21	84	10	129	22	27	31	18	1.97
752520--752567	21	2.3	21	85	0	60	22	12	39	25	1.89
754290--754377	17	5.1	18	68	23	55	60	2	0	37	1.10
754318--754374	18	3.3	17	75	24	57	64	3	0	31	1.10
754318--754389	34	2.1	34	82	10	85	65	5	0	29	1.15
762811--762844	2	17.0	2	100	0	68	50	0	0	50	1.00
763002--763036	19	1.9	19	88	11	56	57	5	0	37	1.23
763785--763809	4	6.2	4	100	0	50	24	0	0	76	0.80
764367--764416	26	1.9	26	88	8	75	54	4	0	42	1.19
765599--765632	16	2.1	16	88	0	50	50	0	2	47	1.16
765675--765708	16	2.0	18	88	11	54	26	2	5	64	1.30
766177--766424	130	1.9	130	91	0	406	34	12	15	36	1.86
766825--766900	35	2.2	35	90	0	116	36	1	22	39	1.63
770694--770756	15	4.2	15	95	0	117	31	33	20	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770841--770918	29	2.7	29	98	2	149	17	21	15	44	1.86
770930--770975	12	3.8	12	91	0	56	39	26	6	28	1.81
770930--770976	24	2.0	24	87	8	69	38	25	6	29	1.81
770943--770976	12	2.8	12	95	0	59	41	26	2	29	1.70
771285--771509	64	3.5	63	84	4	231	27	20	20	31	1.98
777659--777750	15	6.1	15	92	0	139	31	33	19	15	1.93
777659--777750	45	2.0	45	93	0	157	31	33	19	15	1.93
777835--777912	29	2.7	29	94	2	140	16	21	16	44	1.86
777924--777967	12	3.7	12	90	0	52	38	25	6	29	1.81
778362--778400	18	2.2	18	86	9	53	23	23	25	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11