genome.fa.s8310.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008310.1 Hibiscus syriacus cultivar Beakdansim tig00111000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3887810

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  1  of  15  ( 1695 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20111--20168	21	2.8	21	78	0	71	10	32	37	18	1.85
29612--29654	18	2.4	18	100	0	86	62	4	11	20	1.46
29611--29654	10	4.9	9	82	17	56	63	4	11	20	1.44
30560--30622	33	1.9	33	96	0	117	34	22	11	31	1.89
34349--34389	16	2.6	16	88	11	59	34	21	4	39	1.75
41032--41070	16	2.4	16	91	0	60	25	61	5	7	1.44
41308--41350	19	2.2	20	87	4	61	46	0	0	53	1.00
42560--42588	14	2.1	14	100	0	58	27	24	20	27	1.99
44272--44361	30	3.0	30	91	1	135	37	15	15	31	1.89
45172--45206	13	2.6	14	86	4	54	42	37	0	20	1.52
45112--45619	254	2.0	254	91	5	823	40	18	7	34	1.78
46842--46904	27	2.3	26	77	17	65	39	3	7	49	1.48
51990--52024	17	2.1	17	100	0	70	31	11	34	22	1.90
52144--52188	22	2.1	22	95	4	83	31	22	26	20	1.98
54057--54098	22	1.9	22	90	0	66	52	11	11	23	1.71
55023--55396	189	2.0	188	96	2	689	27	20	24	27	1.99
60027--60086	31	2.0	30	86	3	84	31	1	1	65	1.13
60481--60638	21	7.8	20	71	9	88	38	25	16	19	1.92
60541--60657	20	5.7	20	75	12	78	38	23	17	20	1.93
60625--60854	20	11.5	20	82	6	234	37	24	18	19	1.93
60644--60854	40	5.3	40	92	1	282	36	24	18	20	1.94
64075--64190	53	2.2	52	87	1	160	18	22	18	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64113--64210	19	5.4	19	84	13	143	14	21	17	46	1.83
64094--64210	52	2.2	53	98	1	227	13	23	17	45	1.84
64269--64417	33	4.3	33	73	18	142	44	18	24	13	1.85
64269--64398	19	7.3	19	79	17	163	45	17	23	13	1.84
64407--64542	19	7.6	19	78	17	166	15	24	16	43	1.87
64269--64417	52	2.8	52	98	1	289	44	18	24	13	1.85
64407--64542	33	3.9	33	72	20	125	15	24	16	43	1.87
64407--64542	53	2.6	52	94	2	236	15	24	16	43	1.87
64649--64685	14	2.6	14	91	0	65	45	21	0	32	1.52
66666--66722	14	3.7	14	77	20	60	45	22	21	10	1.82
66647--66739	33	2.8	33	95	0	168	47	21	20	10	1.80
66610--66744	19	7.6	19	76	16	128	45	23	19	11	1.82
66740--66868	19	7.3	19	75	17	125	8	17	28	45	1.77
66740--66831	33	2.8	33	93	3	150	7	18	28	45	1.76
66912--67385	93	5.1	93	98	0	912	45	18	12	22	1.83
69091--69180	14	5.7	14	74	23	81	42	23	25	8	1.83
69083--69197	33	3.5	33	95	0	212	45	20	24	9	1.81
69090--69202	19	6.8	18	72	23	88	43	22	24	9	1.83
69214--69270	14	3.7	14	75	20	60	8	24	22	43	1.81
69198--69278	33	2.5	33	93	0	135	8	22	23	45	1.79
69255--69330	21	3.7	21	85	3	109	11	25	18	44	1.83
69254--69331	41	1.9	41	94	0	138	12	25	17	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69410--69480	33	2.2	33	89	0	106	47	16	23	11	1.79
69662--69716	22	2.5	22	81	0	74	20	16	40	23	1.91
69862--70055	20	9.6	20	81	5	212	19	19	25	35	1.95
69862--70055	60	3.2	60	82	0	244	19	19	25	35	1.95
70042--70124	21	4.0	21	73	6	78	25	16	24	33	1.96
70022--70120	42	2.4	43	77	11	100	21	18	23	37	1.94
70295--70336	21	2.0	22	85	4	59	28	2	0	69	1.01
78735--79018	124	2.4	116	76	7	275	48	9	13	28	1.72
81932--81956	10	2.5	10	100	0	50	32	20	0	48	1.50
88684--88731	23	2.1	23	84	7	62	39	0	0	60	0.97
96638--97182	187	2.9	186	87	5	741	29	12	20	37	1.90
106387--106438	6	8.7	6	89	0	77	38	13	11	36	1.81
106386--106438	24	2.2	24	96	0	97	39	13	11	35	1.80
107057--107083	14	1.9	14	100	0	54	0	7	7	85	0.75
107827--107866	17	2.3	17	86	4	53	70	0	2	27	1.01
108163--108344	91	2.0	91	93	2	312	35	13	18	32	1.90
108447--108542	28	3.4	28	79	2	102	25	9	27	38	1.86
120870--120914	21	2.1	21	91	0	72	44	4	15	35	1.67
133466--133491	12	2.2	12	100	0	52	61	0	7	30	1.24
134154--134199	23	2.0	23	87	8	67	45	2	0	52	1.13
138238--138297	30	2.0	30	96	0	111	30	5	20	45	1.72
138378--138434	21	2.7	21	94	0	105	21	33	19	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139824--139871	19	2.5	20	82	3	62	52	6	12	29	1.63
141143--141202	30	2.0	30	96	0	111	30	5	20	45	1.72
141283--141340	21	2.8	21	100	0	116	20	36	18	24	1.95
141426--141460	16	2.2	16	100	0	70	20	37	17	25	1.94
141584--141623	20	1.9	21	85	10	55	42	37	5	15	1.68
142706--142792	34	2.6	34	89	3	133	29	41	21	6	1.79
143020--143099	33	2.4	33	91	2	133	42	35	10	12	1.76
145936--145977	20	2.1	20	95	0	75	19	16	11	52	1.74
149651--149733	32	2.6	31	83	3	94	40	15	20	22	1.90
160425--160582	75	2.1	75	89	3	239	16	9	26	47	1.77
165424--165505	28	2.9	28	87	0	128	15	12	31	40	1.85
165775--165845	2	35.5	2	100	0	142	49	0	0	50	1.00
179414--179443	6	5.0	6	100	0	60	0	66	0	33	0.92
182397--182448	22	2.4	22	93	0	86	32	13	21	32	1.92
185208--185266	30	2.0	30	82	0	73	13	25	23	37	1.92
185205--185273	30	2.3	30	76	11	70	13	26	24	36	1.92
190552--190582	4	7.8	4	100	0	62	25	0	22	51	1.48
194027--194073	18	2.6	18	96	0	85	34	27	10	27	1.90
194730--195002	4	68.8	4	85	1	226	25	12	24	36	1.91
194728--195235	16	31.9	16	92	0	678	25	6	24	43	1.79
194728--195235	20	25.5	20	92	0	678	25	6	24	43	1.79
194793--195235	4	110.8	4	93	0	679	25	4	25	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197887--197922	16	2.2	16	95	0	63	55	5	8	30	1.52
198006--198105	43	2.3	43	84	1	121	43	11	19	27	1.84
205876--205906	2	15.5	2	100	0	62	51	0	0	48	1.00
205893--206000	57	1.9	57	92	0	180	39	11	13	35	1.81
206321--206369	25	2.0	25	92	8	82	32	14	0	53	1.41
213176--213208	7	4.7	7	92	0	57	45	36	0	18	1.49
220632--220695	24	2.6	24	83	14	78	4	43	1	50	1.32
222315--222460	70	2.1	66	83	13	172	36	3	5	54	1.41
223327--223481	77	2.0	77	84	2	204	45	10	16	27	1.80
226594--226632	15	2.4	17	87	12	55	51	5	15	28	1.64
227415--227454	20	2.0	20	90	0	62	55	10	10	25	1.64
229322--229346	13	1.9	13	100	0	50	20	24	40	16	1.91
229327--229367	18	2.3	18	95	0	73	12	21	48	17	1.79
229345--229375	13	2.4	13	94	0	53	16	19	48	16	1.81
229387--229441	9	5.6	10	77	10	60	36	27	20	16	1.93
229394--229442	10	4.8	11	73	16	52	38	24	18	18	1.93
236509--236549	18	2.3	18	100	0	82	9	21	51	17	1.74
236503--236532	13	2.3	13	100	0	60	13	23	46	16	1.82
236527--236559	13	2.5	13	95	0	57	15	21	48	15	1.81
236502--236570	31	2.2	31	86	0	102	17	23	43	15	1.87
236562--236615	10	5.7	9	85	10	72	33	29	22	14	1.94
236562--236616	19	2.9	18	86	10	74	32	29	21	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239620--239679	10	5.6	10	76	11	57	73	3	1	21	1.07
239625--239697	31	2.3	32	84	9	96	69	4	4	21	1.22
239822--240242	211	2.0	211	91	0	682	38	14	13	34	1.84
240419--240467	10	4.9	10	85	7	57	28	2	2	67	1.13
242391--242459	20	3.5	20	95	0	120	34	21	15	27	1.94
250238--250423	70	2.7	69	83	9	222	51	3	3	41	1.36
250238--250397	35	4.6	35	69	17	100	51	4	3	40	1.40
250326--250415	34	2.8	29	76	23	83	52	2	2	43	1.26
255046--255225	90	2.0	90	97	0	342	36	15	21	27	1.93
256826--257407	54	10.9	54	87	5	675	30	20	15	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15