genome.fa.s8310.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008310.1 Hibiscus syriacus cultivar Beakdansim tig00111000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3887810

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  2  of  15  ( 1695 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256861--257407	108	5.1	108	90	2	824	30	20	15	33	1.94
256861--257407	162	3.4	161	90	2	831	30	20	15	33	1.94
262300--262355	24	2.2	26	78	15	64	44	3	0	51	1.18
262328--262369	17	2.3	17	88	12	57	47	2	0	50	1.14
262399--262438	18	2.2	17	83	12	53	27	2	0	70	1.01
264608--264703	48	2.0	48	95	0	174	43	13	11	31	1.79
264935--265004	11	6.2	11	73	18	54	78	4	15	1	0.98
264932--265019	18	4.9	18	75	20	71	77	3	17	2	1.01
264946--264997	14	3.7	15	78	19	58	80	5	13	0	0.88
264941--264994	24	2.3	23	84	6	74	81	5	12	0	0.85
265932--266008	25	3.1	25	84	3	93	35	16	1	46	1.56
268127--268161	18	1.9	18	88	11	54	37	42	20	0	1.52
269433--269492	21	2.9	20	78	11	59	26	5	0	68	1.10
275824--275933	39	2.8	40	71	15	102	30	10	27	32	1.89
277306--277610	167	1.8	168	87	4	454	36	14	15	32	1.89
277879--277921	3	14.3	3	100	0	86	32	0	0	67	0.91
281038--281111	30	2.6	28	77	8	80	71	5	14	8	1.28
281038--281105	28	2.5	26	72	13	73	72	4	14	8	1.26
287287--287322	2	18.0	2	100	0	72	50	0	0	50	1.00
287596--287662	21	2.8	24	81	18	79	43	0	0	56	0.99
295341--295827	181	2.7	178	78	6	493	41	9	11	38	1.72
297928--297988	2	32.0	2	84	15	85	49	1	0	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297937--297988	13	4.2	13	88	11	83	51	0	0	48	1.00
300959--301086	62	2.1	62	92	1	213	40	14	21	22	1.90
301667--301711	22	2.0	22	86	0	63	71	4	0	24	1.05
302734--302775	3	14.0	3	89	0	66	28	0	4	66	1.12
306586--306637	22	2.3	23	76	6	61	46	5	3	44	1.45
307144--307276	33	4.1	32	77	7	126	50	8	4	36	1.53
307156--307289	65	2.1	65	82	10	159	51	8	5	34	1.56
310643--310681	17	2.2	18	90	4	62	61	0	0	38	0.96
316800--316852	16	3.2	16	72	5	52	41	26	1	30	1.66
317025--317083	23	2.6	23	91	0	91	27	25	27	20	1.99
317109--317315	101	2.0	102	92	1	344	36	23	13	26	1.92
320945--320997	16	3.2	16	72	5	52	41	26	1	30	1.66
321170--321238	23	3.0	23	82	0	84	24	24	28	21	1.99
321254--321466	103	2.1	103	93	0	363	37	22	14	26	1.92
327708--327740	15	2.2	15	94	0	57	27	3	0	69	1.03
329209--329280	37	1.9	37	83	10	94	22	5	8	63	1.43
338361--338404	22	2.0	22	86	4	63	29	11	6	52	1.63
342660--342740	20	3.9	20	73	12	56	14	25	34	24	1.94
349799--349856	31	1.9	30	86	6	82	18	17	12	51	1.75
351812--351887	20	3.8	20	77	16	75	26	34	18	21	1.96
351812--351887	22	3.8	19	79	16	73	26	34	18	21	1.96
353755--353794	21	1.9	21	85	10	55	52	0	10	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357541--357618	23	3.5	22	79	11	86	29	20	17	32	1.96
361937--361982	19	2.4	19	88	0	74	41	10	10	36	1.75
361936--361991	19	2.8	19	83	5	67	39	16	12	32	1.85
369777--370107	39	8.5	39	88	0	484	31	16	15	35	1.91
370123--370297	59	3.0	59	94	0	305	27	30	17	24	1.97
370359--370798	224	2.0	224	88	0	666	29	29	17	23	1.97
371936--371972	18	2.1	18	90	5	58	13	2	5	78	1.03
375374--375463	47	1.9	47	90	0	144	44	10	13	32	1.77
375507--375583	37	2.1	37	95	0	136	15	16	10	57	1.65
380290--380358	23	3.0	22	81	8	75	30	26	24	18	1.98
380563--380614	21	2.4	21	80	6	59	32	23	5	38	1.78
383841--383886	24	1.9	24	82	8	58	26	21	15	36	1.93
389197--389240	22	2.0	22	100	0	88	18	13	13	54	1.71
393938--394027	23	4.0	23	78	15	98	34	26	16	22	1.95
394694--394745	20	2.6	20	90	0	86	25	26	17	30	1.97
395371--395461	23	4.1	22	74	14	80	24	15	26	34	1.95
395328--395452	21	5.8	21	72	12	76	23	15	26	35	1.94
401356--401386	2	16.0	2	93	6	55	48	0	0	51	1.00
401376--401463	18	4.7	18	70	22	65	42	0	5	52	1.25
401455--401500	22	2.1	22	95	0	83	43	0	2	54	1.12
409472--409507	2	18.5	2	94	5	65	50	0	0	50	1.00
409498--409589	21	4.6	19	77	20	91	46	1	3	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409521--409584	20	3.3	20	76	24	66	48	0	3	48	1.17
409552--409598	25	1.9	24	95	4	85	46	0	4	48	1.21
411874--411930	30	1.9	30	85	0	78	35	7	8	49	1.61
415732--416043	156	2.0	156	98	1	599	25	18	21	34	1.96
428673--428726	6	8.8	6	97	2	99	33	50	1	14	1.54
429402--429458	28	2.0	28	96	0	105	36	12	22	28	1.90
430144--430214	33	2.2	33	97	0	133	39	22	11	26	1.88
438997--439059	26	2.4	26	91	0	99	20	14	22	42	1.88
444965--445027	26	2.4	26	91	0	99	20	14	22	42	1.88
456127--456189	23	2.6	24	78	19	60	52	0	0	47	1.00
456144--456207	22	2.9	23	84	6	71	48	0	0	51	1.00
456155--456224	32	2.2	33	87	10	101	47	1	0	51	1.09
456174--456276	55	1.9	53	83	15	131	50	0	1	46	1.19
456316--456360	23	2.0	23	86	0	63	53	2	2	42	1.25
456652--456687	14	2.6	14	86	0	54	33	19	13	33	1.91
458311--458341	6	5.2	6	100	0	62	32	51	0	16	1.44
459341--459378	20	1.9	20	88	0	58	31	36	21	10	1.87
461019--461064	19	2.4	19	81	0	56	17	4	15	63	1.47
463442--463483	20	2.1	20	90	0	66	33	38	19	9	1.84
465587--465620	16	2.1	16	89	10	52	23	14	17	44	1.86
468943--469114	31	5.6	29	73	19	134	38	4	0	56	1.22
468946--469247	59	4.9	60	76	18	225	37	6	2	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469095--469149	28	2.0	28	82	7	67	43	7	1	47	1.41
468947--469247	124	2.4	121	80	9	299	37	6	2	53	1.39
469142--469247	55	1.9	56	90	5	171	34	8	4	51	1.53
469157--469242	27	3.1	27	68	12	68	34	8	5	51	1.56
471667--471729	33	1.9	32	81	9	74	46	1	1	50	1.20
471756--471781	13	2.0	13	100	0	52	53	0	0	46	1.00
474286--474336	19	2.6	20	87	3	68	45	5	13	35	1.68
481508--481559	25	2.0	25	85	3	68	48	0	9	42	1.36
487382--487474	9	10.2	9	75	11	82	79	1	16	3	0.92
487382--487475	18	5.3	18	79	11	95	78	1	17	3	0.93
487387--487430	20	2.2	20	88	8	63	81	0	15	2	0.78
487389--487484	27	3.6	25	78	14	95	77	1	17	4	0.99
489557--489820	91	2.9	91	87	1	368	35	14	25	24	1.93
489738--490149	136	3.0	135	82	3	486	36	17	19	26	1.94
494178--494202	13	1.9	13	100	0	50	56	0	8	36	1.29
497446--497828	188	2.0	186	85	3	518	43	13	12	30	1.81
498153--498572	229	1.8	230	88	3	650	34	6	22	35	1.80
500136--500183	12	4.3	12	82	17	59	52	0	47	0	1.00
500127--500174	20	2.5	20	86	6	64	50	0	50	0	1.00
500126--500190	21	3.1	21	78	12	80	52	0	47	0	1.00
500145--500186	12	3.6	12	90	6	68	54	0	45	0	0.99
500130--500190	9	7.2	9	77	20	60	52	0	47	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501566--501606	21	2.0	20	90	9	66	26	9	14	48	1.75
501228--501779	200	2.8	200	84	5	677	41	10	15	32	1.81
503735--503779	21	2.1	22	84	12	58	24	11	11	53	1.68
505283--506138	453	1.9	451	83	4	1118	41	14	13	30	1.83
507612--508153	280	1.9	276	88	3	802	38	15	12	32	1.85
508111--508822	227	3.1	227	83	5	765	31	16	14	37	1.89
508444--508822	118	3.2	118	88	3	552	31	17	14	36	1.90
509648--509703	24	2.4	23	72	3	58	28	14	8	48	1.74
516117--516157	18	2.2	18	86	4	55	34	9	4	51	1.56
518179--518301	43	2.9	43	92	0	201	54	22	3	19	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15