genome.fa.s8310.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008310.1 Hibiscus syriacus cultivar Beakdansim tig00111000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3887810

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  4  of  15  ( 1695 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
832319--832359	7	5.9	7	88	0	64	82	0	17	0	0.66
836978--837057	22	3.6	22	91	0	133	32	16	12	38	1.86
837714--838405	45	15.4	45	93	0	1127	23	22	19	34	1.96
838588--838668	3	26.7	3	79	2	90	37	1	1	60	1.13
840045--840095	26	2.0	26	84	0	66	35	9	0	54	1.33
840188--840231	21	2.0	22	83	12	56	43	6	0	50	1.29
840792--840829	18	2.1	18	90	0	58	34	21	7	36	1.82
840801--840854	18	3.0	18	91	0	81	29	9	14	46	1.76
846322--846370	19	2.5	19	83	3	62	32	12	28	26	1.92
846787--847130	54	6.4	53	88	2	463	32	23	20	24	1.98
846787--847130	163	2.1	162	89	1	519	32	23	20	24	1.98
849054--849141	23	3.9	23	86	3	115	13	20	15	50	1.78
854930--854955	3	8.7	3	100	0	52	34	0	0	65	0.93
856724--856770	17	2.8	17	90	6	69	34	12	6	46	1.67
859653--859720	23	3.2	22	84	10	79	76	5	14	2	1.09
859662--859720	10	5.7	10	72	21	50	77	5	13	3	1.05
861098--861193	50	1.9	50	91	0	156	21	19	13	44	1.85
861136--861434	66	4.6	65	80	6	288	26	20	13	40	1.89
861852--861901	3	16.3	3	87	4	73	36	2	0	62	1.07
862081--862120	19	2.2	18	86	4	53	30	37	22	10	1.87
866210--866295	10	9.2	10	65	27	55	9	11	22	56	1.62
866205--866291	16	5.4	16	95	0	156	8	12	22	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
873746--873786	21	2.0	21	85	9	57	2	46	0	51	1.14
876185--876235	13	4.2	12	78	16	52	56	0	0	43	0.99
876188--876235	19	2.5	19	83	6	62	58	0	0	41	0.98
881906--881991	14	6.3	14	71	12	63	47	3	0	48	1.18
881955--882082	35	3.7	34	77	17	111	53	0	0	45	1.11
881995--882079	42	2.0	43	86	6	120	50	1	1	47	1.16
882036--882090	17	3.1	17	77	12	56	49	3	1	45	1.30
885057--885103	24	2.0	24	83	8	60	34	19	25	21	1.96
885066--885115	24	2.1	23	85	3	64	36	20	26	18	1.95
885123--885203	23	3.5	23	82	0	99	33	25	22	18	1.97
886365--886389	3	8.3	3	100	0	50	68	0	32	0	0.90
887504--887559	21	2.7	21	97	0	103	32	26	19	21	1.97
887719--887769	16	2.7	21	71	28	67	31	27	21	19	1.97
891766--891809	19	2.3	19	92	0	70	36	29	20	13	1.91
894277--894315	20	2.0	20	89	0	60	61	2	0	35	1.10
896286--896322	19	2.1	18	90	10	58	40	8	5	45	1.56
909517--909556	21	1.9	21	85	10	55	25	32	25	17	1.97
914806--914858	3	17.7	3	76	7	54	62	3	1	32	1.24
914921--914963	18	2.4	18	80	3	52	39	9	6	44	1.64
914950--915040	23	3.9	22	81	9	92	53	2	0	43	1.12
914955--914995	2	21.5	2	82	9	50	48	0	0	51	1.00
914950--915040	24	3.9	23	85	1	101	53	2	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
915083--915126	17	2.5	18	81	7	54	50	4	0	45	1.22
919675--919703	2	14.5	2	100	0	58	51	0	0	48	1.00
919861--919915	13	4.2	13	85	0	74	34	14	21	29	1.93
919861--919915	26	2.1	26	89	0	83	34	14	21	29	1.93
921086--921115	15	2.0	15	93	0	51	60	3	6	30	1.39
921881--921918	17	2.2	18	86	13	53	73	7	2	15	1.17
928347--928385	13	3.1	13	96	3	71	23	12	25	38	1.90
929661--929775	23	4.9	24	76	8	112	31	23	20	25	1.98
936144--936180	2	18.0	2	88	5	56	45	0	2	51	1.15
941100--941474	184	2.0	185	91	2	603	42	3	8	45	1.51
942001--942039	2	19.5	2	100	0	78	51	0	0	48	1.00
942085--942113	2	15.0	2	92	7	51	48	0	0	51	1.00
943326--943356	3	10.7	3	93	6	55	32	0	0	67	0.91
943327--943355	14	2.1	14	100	0	58	34	0	0	65	0.93
943452--943481	15	1.9	16	93	6	53	40	40	20	0	1.52
948954--949020	28	2.4	29	85	7	93	53	1	0	44	1.09
948960--949050	43	2.1	43	82	8	105	51	1	2	45	1.20
949024--949097	31	2.5	30	78	10	80	51	1	4	43	1.29
949034--949217	31	5.7	31	73	18	144	50	2	4	42	1.36
948939--949211	65	4.3	65	75	13	228	50	1	4	43	1.31
949090--949188	20	4.7	19	69	28	60	46	2	6	45	1.39
949098--949188	43	2.2	40	86	7	119	46	2	6	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949118--949210	29	3.0	29	70	19	78	48	3	5	43	1.42
948980--949252	130	2.1	132	81	6	315	48	2	4	44	1.36
949320--949639	18	17.4	19	69	20	152	41	7	6	44	1.59
949327--949384	22	2.6	22	80	15	66	44	5	8	41	1.57
949355--949684	2	159.0	2	63	22	51	42	6	6	44	1.57
949311--949421	57	1.9	59	88	3	172	42	6	9	42	1.61
949323--949505	24	8.2	21	69	19	72	41	7	7	43	1.60
949341--949454	37	3.2	35	86	9	151	42	4	7	45	1.53
949378--949419	22	2.0	21	90	4	66	42	4	7	45	1.52
949383--949470	20	4.2	21	81	11	69	39	6	6	46	1.57
949399--949439	15	2.6	16	88	7	57	41	2	7	48	1.44
949494--949634	51	2.8	50	92	2	221	42	6	6	44	1.55
949600--949632	9	3.7	9	84	15	50	39	0	6	54	1.25
949689--950146	216	2.1	216	93	0	772	29	11	8	49	1.69
951352--951444	31	2.8	32	90	6	134	24	19	21	34	1.96
951339--951460	35	3.6	35	82	8	171	23	18	21	36	1.94
954323--954359	18	2.0	18	89	5	56	40	0	0	59	0.97
956462--956539	5	14.4	5	98	1	102	25	55	19	0	1.43
957275--957313	21	2.0	20	90	10	62	30	30	17	20	1.96
957696--957753	23	2.5	24	75	10	59	46	1	6	44	1.40
958946--959039	47	2.0	47	87	6	136	70	1	6	22	1.16
960348--960401	20	2.6	21	73	5	56	64	1	3	29	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960454--960626	35	4.9	35	79	5	179	40	12	5	42	1.64
960446--960626	71	2.6	69	80	7	184	41	12	4	40	1.65
960684--960718	2	17.5	2	100	0	70	48	0	0	51	1.00
969113--969333	4	52.2	4	68	23	75	72	0	6	20	1.12
969112--969337	9	23.9	9	71	21	119	72	0	6	20	1.11
969161--969264	6	16.7	6	70	21	54	74	0	6	19	1.04
969117--969408	11	25.6	11	65	18	70	72	0	7	18	1.12
969194--969338	42	3.5	42	68	16	115	71	1	6	21	1.16
969118--969299	35	5.5	32	75	15	92	72	1	5	20	1.11
969284--969353	19	3.7	18	75	16	70	72	0	10	17	1.10
969313--969408	27	3.5	26	75	20	88	75	0	10	14	1.06
969347--969400	15	3.4	16	74	20	51	75	0	11	12	1.04
970715--970750	2	18.0	2	100	0	72	50	0	0	50	1.00
971528--971706	65	2.8	64	86	5	242	25	14	21	38	1.91
971898--971925	6	4.7	6	100	0	56	67	0	14	17	1.22
976844--976868	8	3.1	8	100	0	50	28	12	36	24	1.91
976953--977012	30	2.0	30	96	0	111	45	20	5	30	1.72
978277--978324	19	2.5	20	82	3	62	29	12	6	52	1.63
979883--980092	64	3.2	64	81	7	203	26	15	25	32	1.95
979989--980027	19	2.1	19	90	0	60	25	12	38	23	1.90
980053--980092	21	1.9	21	94	0	71	22	15	30	32	1.94
982529--982608	24	3.5	23	77	14	94	27	23	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
982506--982628	44	2.8	42	75	12	122	24	21	28	26	1.99
988605--988711	4	26.8	4	72	19	73	75	0	5	17	1.04
988604--988901	5	57.8	5	68	23	65	73	1	7	18	1.13
988604--988903	27	11.0	26	65	20	107	73	1	7	18	1.13
988666--988749	6	13.5	6	74	20	50	75	0	7	17	1.03
988648--988830	63	3.0	61	76	19	168	71	0	7	20	1.13
988659--988910	21	12.6	19	69	15	120	73	1	7	18	1.13
990952--991130	65	2.8	63	88	5	240	27	13	20	38	1.90
991947--992076	66	2.0	65	80	7	147	11	21	11	55	1.67
1002247--1002471	4	55.2	4	69	21	87	73	1	6	18	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15