genome.fa.s8316.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008316.1 Hibiscus syriacus cultivar Beakdansim tig00111013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2380696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  1  of  12  ( 1404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3766--3827	26	2.4	25	78	2	70	51	8	0	40	1.31
15289--15494	80	2.6	80	91	1	324	35	13	16	33	1.88
15309--15433	41	3.1	40	72	7	137	36	14	17	31	1.90
15289--15500	39	5.3	39	75	6	201	35	12	17	33	1.88
15725--15858	41	3.3	40	76	5	153	36	14	17	32	1.89
15716--15929	80	2.7	80	88	2	306	35	12	17	34	1.87
15770--15922	39	3.9	39	75	6	164	39	12	16	31	1.86
16141--16345	41	5.2	39	71	8	137	36	12	16	35	1.86
16151--16280	41	3.2	41	72	4	138	37	15	15	31	1.89
16138--16337	80	2.5	80	90	1	312	37	13	16	33	1.86
15275--16558	422	3.0	424	96	1	2369	28	16	18	36	1.93
28642--28720	31	2.5	31	97	0	149	43	21	13	21	1.87
28781--28822	12	3.6	12	80	6	59	21	21	23	33	1.97
28772--28822	23	2.2	23	96	0	93	21	21	23	33	1.97
30185--30227	19	2.4	19	84	7	63	37	9	23	30	1.86
30736--30787	13	3.9	13	80	12	52	21	0	34	44	1.52
30735--30794	20	3.0	21	82	7	70	20	0	33	46	1.51
30911--30973	11	5.9	11	73	14	60	39	1	1	57	1.18
32876--33060	31	6.0	31	95	1	318	37	22	20	20	1.95
37245--37429	31	6.0	31	95	1	318	37	22	20	20	1.95
41634--41817	31	6.0	31	94	2	309	36	22	20	20	1.95
41634--41818	61	3.0	61	94	2	309	36	23	20	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41634--41817	92	2.0	93	93	3	318	36	22	20	20	1.95
43263--43314	20	2.6	20	96	0	95	38	26	13	21	1.90
43304--43402	21	4.8	20	72	6	72	36	23	19	21	1.95
43369--43562	20	9.6	20	80	5	212	35	25	19	19	1.95
43369--43562	60	3.2	60	82	0	244	35	25	19	19	1.95
43943--44013	33	2.2	33	92	0	115	11	22	18	47	1.80
44133--44187	14	3.6	14	73	21	56	40	23	27	9	1.85
44133--44203	33	2.2	33	92	0	115	42	25	23	8	1.82
44199--44296	19	5.7	19	70	22	81	10	24	22	42	1.84
44221--44310	14	5.7	14	74	23	81	8	25	23	42	1.83
44204--44318	33	3.5	33	95	0	212	9	24	20	45	1.81
46016--46391	182	2.0	184	96	2	702	22	12	18	46	1.83
46016--46392	93	4.1	93	96	2	699	22	12	18	46	1.82
46436--46564	19	7.3	19	75	17	125	45	28	17	8	1.77
46472--46564	33	2.8	32	91	4	150	46	27	18	7	1.76
46436--46564	52	2.5	52	74	14	140	45	28	17	8	1.77
46560--46695	19	7.6	19	75	17	130	10	19	24	46	1.80
46582--46639	14	3.7	14	74	24	53	8	20	24	46	1.78
46565--46658	34	2.8	33	95	3	170	9	20	22	47	1.78
48508--48580	38	1.9	38	97	0	137	28	1	16	53	1.51
48504--48567	19	3.4	19	64	10	51	25	1	15	57	1.47
48562--48597	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48704--48804	19	5.6	19	86	11	158	44	17	22	14	1.86
48811--49130	52	6.0	52	94	4	550	14	21	16	46	1.83
48833--49158	19	18.4	19	80	15	405	14	20	17	47	1.82
48811--49130	161	2.0	157	93	3	552	14	21	16	46	1.83
48852--49158	33	8.8	33	80	12	280	14	20	17	47	1.82
51655--51701	24	2.0	24	87	8	69	38	21	14	25	1.92
52371--52779	20	20.5	20	85	5	486	20	18	25	35	1.95
55422--55461	18	2.2	19	86	4	55	67	7	2	22	1.28
55435--55567	72	1.9	70	81	6	160	46	9	7	36	1.65
55478--55611	70	1.9	70	82	10	166	42	11	8	37	1.72
56957--56990	6	5.7	6	100	0	68	64	0	0	35	0.94
56986--57020	7	4.7	7	86	13	52	45	0	0	54	0.99
56986--57021	16	2.4	15	90	9	56	47	0	0	52	1.00
77138--77179	18	2.4	16	85	14	57	47	2	0	50	1.14
84904--84973	27	2.6	27	95	0	122	34	21	22	21	1.97
91020--91083	3	21.0	3	96	3	119	67	0	0	32	0.91
93018--93051	2	17.0	2	100	0	68	50	0	0	50	1.00
93621--93675	21	2.6	21	88	0	83	18	32	29	20	1.96
93708--93749	21	2.0	21	90	0	66	23	19	33	23	1.97
96285--96502	103	2.1	103	96	0	400	25	13	23	37	1.91
96518--96581	23	2.8	23	90	9	96	18	25	26	29	1.98
100313--100369	26	2.2	26	100	0	114	26	7	19	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100562--100709	74	2.0	74	97	0	278	36	14	23	25	1.93
100910--100973	21	3.0	21	90	0	110	20	23	31	25	1.98
105187--105219	16	2.1	16	94	0	57	78	12	9	0	0.95
107211--107262	20	2.7	19	75	16	54	59	1	0	38	1.08
115812--115852	8	5.2	8	82	5	57	34	0	29	36	1.58
115923--116679	128	5.9	128	97	0	1338	22	24	20	32	1.98
117080--117179	33	3.0	34	83	2	139	39	3	4	54	1.35
117698--117791	21	4.5	21	87	10	138	21	27	32	18	1.96
117795--117842	21	2.3	21	85	0	60	22	12	39	25	1.89
119565--119653	34	2.7	31	81	6	97	59	2	0	38	1.10
119568--119642	31	2.4	33	77	11	84	60	1	0	38	1.06
119852--119887	16	2.2	16	100	0	72	5	38	44	11	1.63
120232--120284	3	17.7	3	77	14	56	28	0	1	69	0.99
120223--120268	21	2.2	21	88	0	65	32	0	2	65	1.05
120232--120283	21	2.5	21	96	0	95	26	0	1	71	0.97
120231--120294	18	3.6	18	77	8	60	29	0	3	67	1.06
120309--120350	21	2.0	21	95	0	75	54	0	0	45	0.99
131910--131940	14	2.2	14	94	0	53	61	0	0	38	0.96
134766--134791	13	2.0	13	100	0	52	30	0	15	53	1.42
147618--147675	29	2.0	28	90	9	91	24	18	13	43	1.87
148630--148697	30	2.3	31	92	5	113	47	1	7	44	1.40
152217--152470	130	2.0	130	99	0	499	53	7	11	27	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165154--165220	24	2.6	26	83	9	84	31	2	11	53	1.52
196675--196751	31	2.5	31	78	2	82	15	27	29	27	1.96
198328--198379	20	2.6	20	93	0	95	26	17	17	38	1.92
206969--207292	167	1.9	166	90	3	508	40	16	10	32	1.84
212038--212071	16	2.3	14	90	10	50	41	0	0	58	0.98
212314--212363	22	2.3	21	79	3	55	46	4	4	46	1.40
213709--213786	41	2.0	40	85	10	106	17	35	25	20	1.95
214000--214034	12	2.9	12	91	8	54	22	2	5	68	1.24
217298--217384	35	2.5	34	78	12	88	56	10	6	26	1.58
217602--217645	9	4.9	9	80	0	52	6	29	25	38	1.81
217602--217645	18	2.4	18	92	0	70	6	29	25	38	1.81
223891--223970	42	1.9	42	84	5	108	13	11	18	56	1.67
231858--231888	15	2.1	15	100	0	62	58	22	0	19	1.40
236858--236915	20	2.6	22	86	10	75	31	18	22	27	1.97
238385--238508	64	1.9	65	88	4	189	37	18	18	25	1.94
239201--239264	30	2.1	30	85	0	83	18	18	28	34	1.95
242627--242750	64	1.9	65	88	4	189	37	18	18	25	1.94
243425--243488	30	2.1	30	85	0	83	18	18	28	34	1.95
244757--244798	2	21.0	2	100	0	84	50	0	0	50	1.00
245190--245257	23	3.0	23	80	0	82	17	26	25	30	1.97
246466--246496	16	1.9	16	93	0	53	35	0	3	61	1.12
246822--246862	21	2.0	21	90	0	64	60	0	0	39	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252428--252662	120	2.0	116	94	3	416	37	15	18	27	1.92
257843--257879	16	2.5	14	87	12	56	56	0	0	43	0.99
264447--264512	27	2.4	27	97	0	123	51	15	12	21	1.75
266093--266134	21	2.0	22	81	13	52	52	2	2	42	1.27
269200--269232	6	5.5	6	96	0	57	33	18	27	21	1.96
269800--270142	72	4.8	71	81	4	348	42	14	29	13	1.84
269911--270171	144	1.8	144	83	3	346	44	13	30	12	1.80
270294--270394	51	2.0	51	86	3	141	30	19	31	17	1.95
277224--277294	23	2.7	27	72	22	69	63	7	21	8	1.46
282523--282584	21	2.7	23	73	16	67	25	8	0	66	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12