genome.fa.s8316.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008316.1 Hibiscus syriacus cultivar Beakdansim tig00111013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2380696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  6  of  12  ( 1404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089149--1089191	22	2.0	21	82	13	52	37	16	11	34	1.85
1094776--1094893	58	2.0	58	98	0	227	27	16	11	44	1.82
1100691--1100750	27	2.3	26	88	5	93	43	3	5	48	1.41
1100732--1100765	15	2.3	15	94	0	59	44	0	0	55	0.99
1101101--1101144	19	2.3	19	84	0	52	36	27	11	25	1.90
1101217--1101267	20	2.5	20	96	0	93	29	15	13	41	1.86
1101447--1101484	16	2.5	15	84	12	51	28	5	0	65	1.14
1102227--1102280	24	2.2	24	93	0	90	20	18	20	40	1.91
1103183--1103265	20	4.1	20	77	1	94	20	32	27	19	1.97
1105135--1105196	20	3.0	20	88	9	97	17	38	29	14	1.89
1105135--1105196	22	2.9	22	92	4	101	17	38	29	14	1.89
1107837--1108046	66	3.2	66	96	1	379	50	18	1	29	1.55
1109414--1109511	21	4.7	21	81	6	92	23	18	32	25	1.97
1109414--1109511	41	2.4	42	80	1	117	23	18	32	25	1.97
1111662--1111716	20	2.8	19	75	8	56	49	20	12	18	1.79
1111716--1111763	20	2.4	21	89	6	73	10	16	20	52	1.73
1112098--1112143	22	2.1	22	83	0	56	26	15	39	19	1.91
1112258--1112419	20	8.1	20	79	8	168	18	14	24	42	1.88
1112259--1112441	60	3.1	59	84	4	224	18	15	23	42	1.88
1112339--1112457	60	2.0	60	86	1	157	23	15	22	38	1.92
1112909--1113016	32	3.4	31	83	3	119	37	17	0	43	1.56
1112905--1113025	64	1.9	63	81	5	145	38	16	4	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113875--1113911	19	1.9	19	94	0	65	32	29	16	21	1.95
1114018--1114154	21	6.6	21	88	5	174	31	27	23	17	1.97
1114081--1114206	20	6.2	20	85	9	157	27	27	21	23	1.99
1114060--1114190	61	2.1	61	94	0	226	29	28	22	20	1.98
1114039--1114206	41	4.1	41	82	9	175	29	27	22	20	1.98
1114039--1114206	81	2.1	82	87	5	243	29	27	22	20	1.98
1114081--1114236	81	1.9	81	84	0	204	29	25	21	24	1.99
1114376--1114448	22	3.3	22	82	0	92	20	38	15	26	1.92
1114778--1114860	33	2.5	34	86	2	132	20	21	22	34	1.96
1114832--1114900	20	3.5	20	83	0	66	15	18	23	42	1.89
1114848--1114903	20	2.8	20	86	0	76	10	17	21	50	1.77
1114867--1114910	20	2.2	20	87	0	61	9	15	20	54	1.68
1116234--1116306	21	3.7	20	72	15	62	32	41	10	15	1.82
1116902--1117041	20	7.3	20	69	12	78	36	23	19	20	1.95
1116910--1117082	74	2.3	74	86	3	249	36	21	20	21	1.95
1117086--1117138	19	2.8	19	94	0	97	5	16	30	47	1.70
1117125--1117199	19	4.2	19	69	19	61	20	20	20	40	1.92
1117202--1117241	20	2.0	20	100	0	80	15	10	25	50	1.74
1117722--1117818	21	4.6	21	77	0	104	21	35	18	24	1.96
1119204--1119269	30	2.2	30	94	0	114	31	1	12	54	1.46
1119419--1119682	20	13.9	20	75	12	243	23	19	21	35	1.96
1119441--1119654	54	3.9	54	86	4	259	22	19	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122142--1122195	24	2.2	24	93	0	90	40	20	18	20	1.91
1123007--1123154	20	7.3	20	80	8	174	22	21	27	29	1.99
1123007--1123154	41	3.7	40	82	8	174	22	21	27	29	1.99
1123007--1123154	61	2.4	61	94	0	260	22	21	27	29	1.99
1123085--1123175	41	2.2	41	92	0	146	19	21	27	30	1.98
1123184--1123256	21	3.5	21	84	3	85	32	20	20	26	1.97
1129143--1129172	4	7.5	4	100	0	60	53	0	0	46	1.00
1131063--1131119	28	2.0	28	93	0	96	45	0	5	49	1.24
1132650--1132783	60	2.2	60	81	1	142	31	15	18	34	1.93
1135792--1135821	2	15.0	2	100	0	60	50	0	0	50	1.00
1146091--1146141	2	26.0	2	92	4	86	49	0	0	50	1.00
1160400--1160434	17	2.1	17	100	0	70	54	5	5	34	1.48
1169295--1169336	21	2.0	21	100	0	84	52	0	4	42	1.22
1171355--1171709	191	1.9	191	82	6	450	25	12	17	44	1.84
1172890--1173367	237	2.0	237	100	0	956	32	13	25	29	1.93
1176950--1176983	16	2.1	16	100	0	68	23	41	5	29	1.78
1186150--1186192	21	2.0	21	81	0	50	30	30	25	13	1.94
1186150--1186321	67	2.6	67	86	5	215	27	27	27	17	1.98
1186961--1187026	22	3.0	22	95	0	123	18	25	27	28	1.98
1193057--1193099	21	2.0	21	81	0	50	30	30	25	13	1.94
1193079--1193228	67	2.3	67	87	5	207	28	28	26	17	1.98
1193867--1193932	22	3.0	22	100	0	132	18	27	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1203603--1203677	22	3.5	21	70	15	64	25	20	22	32	1.98
1203597--1203660	20	3.2	19	71	16	65	25	21	23	29	1.99
1203597--1203679	42	2.0	42	95	0	148	25	20	24	30	1.99
1203718--1203742	13	1.9	13	100	0	50	32	24	20	24	1.98
1203491--1203762	135	2.0	135	93	0	463	29	18	22	28	1.98
1203742--1203870	22	6.0	21	68	15	86	28	15	20	35	1.93
1203764--1203937	42	4.2	42	81	7	187	28	16	19	36	1.93
1204359--1204688	53	6.2	53	85	4	416	31	19	27	21	1.97
1204358--1204671	159	2.0	159	88	2	470	32	20	27	20	1.97
1215938--1215984	2	23.5	2	100	0	94	51	0	0	48	1.00
1218095--1218152	24	2.4	25	88	5	91	34	20	20	24	1.97
1218337--1218402	31	2.2	31	91	2	107	34	25	1	37	1.66
1224894--1224950	24	2.3	25	90	3	89	29	24	26	19	1.98
1225139--1225209	31	2.3	31	90	2	108	33	25	2	38	1.71
1225619--1225661	21	2.0	21	86	0	59	16	25	27	30	1.97
1227561--1227610	16	2.7	20	76	20	54	42	4	0	54	1.19
1228170--1228291	7	17.4	7	99	0	172	50	0	42	7	1.30
1239250--1239286	19	1.9	19	94	0	65	32	21	27	18	1.97
1264743--1264784	17	2.3	19	84	12	52	76	4	11	7	1.15
1272073--1272186	24	4.8	24	80	9	96	22	25	23	28	2.00
1280103--1280136	14	2.4	14	90	0	50	50	5	0	44	1.26
1280311--1280341	16	1.9	16	93	0	53	61	12	3	22	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282162--1282235	27	2.7	27	83	4	87	54	22	12	10	1.68
1294344--1294372	2	14.5	2	100	0	58	51	0	0	48	1.00
1295741--1295820	40	2.1	36	86	11	108	36	13	18	31	1.90
1296294--1296341	18	2.8	17	79	14	53	64	0	2	33	1.05
1296280--1296345	22	3.0	21	79	14	62	65	0	3	31	1.08
1296300--1296345	14	3.4	14	73	14	51	63	0	2	34	1.07
1296530--1296586	11	5.0	11	75	23	55	61	0	1	36	1.07
1297942--1299252	106	12.3	106	88	2	1772	23	18	24	34	1.96
1300818--1300880	29	2.1	32	88	8	96	1	12	3	82	0.86
1300817--1300880	16	3.8	16	82	12	67	1	14	3	81	0.89
1300846--1300898	22	2.4	22	85	14	74	1	15	3	79	0.96
1300817--1300863	6	8.0	6	79	13	53	2	12	2	82	0.84
1304336--1304381	20	2.3	20	92	0	74	4	39	30	26	1.75
1307509--1307584	31	2.4	31	82	8	82	52	2	6	38	1.41
1309707--1309958	137	1.8	138	85	2	355	38	13	6	42	1.70
1314151--1314195	3	15.0	3	100	0	90	33	0	0	66	0.92
1314795--1314835	16	2.6	16	88	3	57	29	21	12	36	1.90
1317748--1317778	2	15.5	2	100	0	62	51	0	0	48	1.00
1323673--1323932	20	12.6	20	76	8	83	38	20	23	17	1.93
1323737--1323789	21	2.5	21	100	0	106	24	33	24	16	1.96
1323800--1323930	40	3.2	39	80	10	154	36	18	25	19	1.94
1323779--1323916	63	2.2	63	92	0	222	36	18	26	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1323820--1323950	40	3.2	40	75	3	109	40	18	24	16	1.91
1323923--1323982	20	3.0	20	87	4	86	55	16	16	11	1.70
1323923--1323972	20	2.5	20	96	0	91	54	18	16	12	1.72
1324072--1324115	6	7.5	6	97	2	81	31	52	15	0	1.44
1324806--1324898	6	15.5	6	100	0	186	0	16	50	33	1.45
1324976--1325019	20	2.2	20	91	0	70	11	18	15	54	1.70
1325006--1325056	19	2.6	20	93	3	86	15	17	21	45	1.86
1327754--1327865	20	5.6	20	82	7	120	40	19	20	19	1.92
1327754--1327846	40	2.3	40	92	0	150	39	20	19	20	1.92
1328419--1328479	14	4.0	14	73	19	50	44	22	22	9	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12