genome.fa.s8316.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008316.1 Hibiscus syriacus cultivar Beakdansim tig00111013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2380696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  10  of  12  ( 1404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1903991--1904082	21	4.4	21	81	0	76	23	34	16	25	1.95
1906964--1907017	24	2.2	24	90	0	81	38	20	18	22	1.93
1907756--1907794	15	2.5	15	83	4	51	66	0	2	30	1.05
1907756--1907794	16	2.5	15	84	8	51	66	0	2	30	1.05
1907933--1908040	20	5.5	20	71	17	66	37	11	20	30	1.87
1907952--1908041	40	2.2	40	84	0	108	37	12	20	30	1.89
1913967--1914029	23	2.6	25	85	7	76	66	0	1	31	1.01
1916064--1916745	340	2.0	340	99	0	1355	35	17	16	31	1.92
1923017--1923058	16	2.5	17	81	14	52	69	2	4	23	1.20
1924056--1925021	105	9.3	105	90	4	1424	21	18	26	33	1.96
1924056--1924977	205	4.5	205	94	1	1513	21	18	26	33	1.96
1924056--1924977	310	3.0	309	90	4	1405	21	18	26	33	1.96
1925625--1925782	68	2.4	65	85	4	208	35	9	22	32	1.87
1925626--1925808	65	2.7	67	83	4	201	37	9	22	30	1.86
1925758--1925880	36	3.4	36	83	7	151	39	14	21	24	1.91
1925769--1925880	37	3.1	36	82	8	129	41	15	20	22	1.89
1926863--1926925	29	2.2	29	100	0	126	23	14	33	28	1.94
1927469--1927530	20	3.0	21	79	9	65	1	17	4	75	1.05
1931176--1931214	15	2.7	15	84	4	53	69	2	5	23	1.21
1931099--1931213	61	1.9	60	82	10	144	63	2	3	30	1.24
1936194--1936233	21	1.9	21	94	0	71	30	10	5	55	1.54
1936230--1936333	33	3.2	33	90	1	156	33	8	14	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1941492--1941609	34	3.0	40	75	21	151	53	8	10	27	1.63
1941495--1941560	22	3.1	22	73	8	82	53	7	7	31	1.57
1944680--1944713	3	11.3	3	100	0	68	32	0	0	67	0.91
1955990--1956188	105	1.9	105	84	2	265	38	21	15	25	1.92
1957674--1957753	22	3.7	22	89	3	126	18	28	23	28	1.98
1962268--1962372	54	2.0	53	81	9	124	33	6	0	59	1.30
1962327--1962379	25	2.1	24	83	16	63	33	3	0	62	1.13
1962765--1962806	17	2.5	17	100	0	84	21	7	28	42	1.79
1963307--1963352	24	1.9	24	81	0	56	54	10	4	30	1.55
1969743--1969794	21	2.5	21	96	0	95	32	28	15	23	1.95
1972116--1972196	34	2.5	32	80	11	94	27	7	25	39	1.82
1972182--1972234	27	2.0	27	96	0	97	15	7	33	43	1.74
1974449--1975262	210	3.8	212	91	2	1205	50	7	11	30	1.67
1975286--1975380	2	47.0	2	76	14	88	47	2	3	47	1.30
1975372--1975432	27	2.2	28	88	2	88	47	8	4	39	1.55
1975474--1975511	11	3.5	11	88	0	58	50	2	2	44	1.30
1975450--1975548	42	2.3	43	81	5	103	47	5	5	42	1.47
1975517--1975570	17	3.1	17	81	2	63	46	0	3	50	1.19
1975281--1975603	22	16.0	20	68	16	127	46	4	4	43	1.46
1975517--1975611	9	10.1	9	67	19	52	45	1	4	49	1.28
1975286--1975611	20	16.2	20	68	15	97	46	4	4	44	1.44
1975612--1975639	13	2.2	13	100	0	56	14	0	42	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1975612--1975640	7	4.3	7	91	8	51	13	0	44	41	1.44
1975602--1975650	20	2.4	20	75	3	53	24	0	26	48	1.51
1975667--1975739	20	3.4	20	75	17	74	38	6	2	52	1.43
1975678--1975718	13	3.2	13	83	13	50	39	7	0	53	1.29
1975680--1975739	23	2.7	23	76	19	63	36	6	3	53	1.44
1975691--1975778	33	2.8	32	82	5	106	40	6	5	46	1.54
1975801--1975915	18	5.9	18	76	18	106	40	10	6	41	1.66
1975800--1975917	38	3.0	39	83	11	159	41	10	6	41	1.65
1975886--1975964	33	2.5	31	86	8	113	41	10	7	40	1.67
1975894--1975961	33	2.1	33	94	0	118	42	10	5	41	1.63
1975801--1975950	18	7.9	20	70	24	103	41	10	6	41	1.66
1975913--1976035	53	2.3	53	92	0	201	39	9	6	44	1.63
1975998--1976066	20	3.5	20	81	15	72	42	7	2	47	1.46
1975923--1976063	53	2.6	53	87	3	167	39	9	5	44	1.61
1976025--1976066	9	4.4	9	78	21	50	47	7	0	45	1.30
1976951--1977106	64	2.4	64	78	8	165	34	19	19	25	1.96
1977628--1977661	15	2.3	15	89	0	50	17	20	29	32	1.96
1978343--1978536	33	5.6	34	75	15	148	43	7	7	42	1.60
1978329--1978453	18	7.2	18	70	17	93	44	7	7	41	1.59
1978376--1978535	51	3.0	51	83	8	221	43	6	7	41	1.59
1978642--1978699	29	1.9	31	86	6	84	43	3	3	50	1.36
1981751--1981788	13	2.8	13	82	17	51	60	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981767--1981813	19	2.5	19	93	3	78	61	0	4	34	1.15
1981785--1981861	38	2.0	39	87	7	113	58	3	2	35	1.30
1999372--1999397	2	13.0	2	100	0	52	50	0	0	50	1.00
2007387--2007416	3	10.0	3	100	0	60	33	0	0	66	0.92
2010935--2010981	25	2.0	23	87	8	67	31	17	2	48	1.58
2012845--2012898	15	3.5	15	75	9	54	16	29	33	20	1.95
2012830--2012898	32	2.2	32	89	0	102	18	28	31	20	1.96
2015074--2015137	31	2.0	32	84	3	85	39	4	12	43	1.63
2015812--2015859	24	2.0	24	87	0	69	54	10	0	35	1.35
2019827--2019859	15	2.1	17	88	11	52	33	18	12	36	1.88
2023563--2023623	31	2.0	31	90	3	97	29	6	27	36	1.82
2024745--2024806	21	3.0	21	85	0	88	27	20	25	25	1.99
2033216--2033269	25	2.2	25	100	0	108	14	27	11	46	1.79
2037650--2037703	23	2.3	24	93	3	92	42	1	9	46	1.46
2039114--2039158	18	2.4	20	85	14	69	51	2	0	46	1.13
2039455--2039570	21	5.6	21	66	7	58	33	25	19	20	1.97
2039558--2039793	20	11.6	20	79	8	226	38	24	19	17	1.92
2039558--2039793	41	5.8	40	81	7	235	38	24	19	17	1.92
2039558--2039790	61	3.8	60	81	5	245	39	24	18	17	1.92
2040328--2040398	20	3.5	20	84	5	90	52	18	16	12	1.75
2040456--2040500	15	3.1	15	80	6	65	13	22	24	40	1.90
2040426--2040499	33	2.4	31	88	8	107	12	22	22	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2040485--2040539	20	2.8	18	82	17	65	16	21	21	40	1.91
2042210--2042554	94	3.9	83	79	15	386	22	12	17	46	1.82
2042275--2042577	94	3.2	93	92	0	498	21	11	19	48	1.80
2042663--2042754	33	2.8	33	86	3	125	45	21	22	9	1.81
2042804--2042890	20	4.3	20	95	0	138	19	19	22	37	1.94
2042802--2042900	20	4.9	20	87	2	83	19	19	22	39	1.93
2044760--2044795	14	2.6	14	90	0	54	30	0	22	47	1.52
2044897--2044991	33	2.8	33	90	1	136	42	21	23	13	1.88
2044930--2044989	19	3.4	19	71	21	67	46	18	20	15	1.84
2045024--2045112	20	4.4	20	84	2	117	17	20	24	37	1.94
2045026--2045112	40	2.2	40	89	4	131	18	19	24	37	1.94
2045711--2046249	20	26.8	20	72	12	200	22	18	23	35	1.96
2045710--2046249	40	13.4	39	73	11	251	22	18	23	35	1.96
2045711--2046249	60	8.9	60	69	13	250	22	18	23	35	1.96
2045861--2045905	21	2.1	21	87	0	63	37	17	26	17	1.93
2045977--2046188	41	5.2	41	91	1	320	19	18	24	38	1.93
2045974--2046249	81	3.4	80	78	7	272	19	18	23	38	1.93
2046264--2046317	20	2.7	19	75	8	63	16	18	31	33	1.93
2046457--2046507	15	3.3	15	71	15	50	50	3	3	41	1.39
2046489--2046591	22	4.8	22	75	11	88	48	8	5	36	1.58
2046518--2046570	21	2.5	21	87	0	79	47	5	7	39	1.56
2046516--2046606	21	4.3	20	72	14	76	47	7	6	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2046610--2047980	6	228.3	6	84	7	490	48	15	0	35	1.51
2046596--2046688	24	4.2	22	71	13	66	47	5	4	43	1.46
2046639--2046719	39	2.1	37	84	8	101	44	4	6	44	1.50
2046617--2047978	61	23.5	58	75	17	427	48	15	0	34	1.51
2046747--2047980	18	69.9	18	85	12	1667	49	16	0	34	1.49
2048236--2048271	15	2.4	15	95	0	63	41	2	5	50	1.40
2048591--2048704	2	56.0	2	70	16	65	43	3	2	50	1.33
2061070--2061112	21	2.0	21	81	0	50	30	30	25	13	1.94
2061092--2061244	67	2.2	69	88	4	222	27	28	26	17	1.98
2061247--2061282	13	2.8	14	88	12	51	75	0	25	0	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12