genome.fa.s8316.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008316.1 Hibiscus syriacus cultivar Beakdansim tig00111013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2380696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282523--282586	23	2.9	23	73	17	64	26	7	0	65	1.19
282603--282631	2	14.5	2	100	0	58	48	0	0	51	1.00
282631--282657	2	13.5	2	100	0	54	0	0	48	51	1.00
282725--282777	19	2.7	20	82	5	63	30	0	0	69	0.88
282745--282813	4	16.8	4	78	16	63	26	1	0	72	0.93
282727--282813	26	3.4	25	79	16	90	27	1	0	71	0.93
282726--282813	13	7.2	12	72	20	51	27	1	0	71	0.93
282914--282961	18	2.7	17	78	15	53	14	12	0	72	1.11
283006--283048	19	2.3	19	88	8	61	18	2	2	76	1.00
283033--283081	25	2.0	25	87	0	71	10	6	8	75	1.18
284648--284690	7	6.1	7	94	0	77	44	0	25	30	1.55
285540--285603	21	3.0	21	86	4	92	28	23	25	23	2.00
285876--285904	14	2.0	15	93	6	51	13	13	13	58	1.63
288843--288980	69	2.0	69	90	2	215	36	20	15	27	1.92
289906--289999	31	3.0	31	90	3	143	28	11	19	40	1.86
289906--289999	32	3.0	32	92	1	145	28	11	19	40	1.86
289894--290012	32	3.8	33	86	6	131	28	13	20	37	1.90
290590--290806	106	2.0	106	87	0	308	32	23	20	23	1.98
290954--291102	68	2.2	68	83	5	180	32	20	8	38	1.82
292527--292839	149	2.1	149	95	1	574	34	20	15	28	1.94
294239--294399	64	2.5	63	85	8	200	26	21	18	33	1.96
295503--295755	110	2.3	110	83	5	302	34	23	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295170--295870	378	1.9	378	94	0	1233	33	24	18	24	1.97
297190--297236	24	1.9	25	91	4	78	23	4	0	72	1.02
297170--297275	25	4.4	23	77	15	81	33	2	0	64	1.08
297317--297375	17	3.3	17	70	21	57	25	8	0	66	1.20
297315--297375	18	3.3	18	73	13	70	26	8	0	65	1.20
297327--297471	57	2.6	55	79	12	136	27	5	0	66	1.13
297424--297517	36	2.6	38	83	14	103	23	4	3	69	1.21
297345--297481	57	2.4	57	81	11	142	27	4	0	67	1.14
297416--297528	36	3.2	35	75	16	99	25	5	3	65	1.30
297553--297588	19	1.9	19	88	5	56	13	8	0	77	0.98
297631--297706	9	8.1	9	75	16	66	18	3	3	73	1.14
303856--303897	10	4.2	10	79	11	50	33	26	0	40	1.56
304020--304241	111	2.0	111	96	0	408	36	8	10	44	1.70
308498--308550	21	2.5	21	84	0	70	20	26	18	33	1.96
308525--308667	41	3.5	42	83	6	179	37	18	18	24	1.94
308540--308680	61	2.3	60	81	4	149	39	18	19	22	1.93
308525--308788	20	13.0	20	73	11	164	32	19	17	29	1.95
308640--308787	41	3.7	40	77	11	151	29	20	16	33	1.95
309057--309414	178	2.0	179	99	0	709	32	11	18	37	1.87
312196--312250	19	2.8	19	83	2	65	38	21	21	18	1.94
312157--312250	20	4.7	20	71	13	68	35	23	20	21	1.96
312227--312316	33	2.7	33	94	0	153	46	18	23	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312203--312314	19	6.4	19	66	20	64	44	19	23	12	1.84
312326--312391	19	3.7	19	69	19	61	13	22	18	45	1.84
312498--312534	14	2.6	14	91	0	65	45	21	0	32	1.52
313926--314009	42	2.0	42	85	0	114	22	16	39	21	1.92
314399--314450	19	2.6	19	78	6	59	48	21	17	13	1.81
314423--314482	32	1.9	32	86	3	86	46	26	18	8	1.77
314510--314565	20	2.8	20	91	2	96	10	23	17	48	1.79
314656--314948	94	3.3	87	92	5	387	48	19	11	20	1.79
314723--314948	94	2.4	94	96	0	409	47	19	12	20	1.81
314858--315010	78	1.9	79	89	5	236	43	18	13	24	1.86
316673--316732	20	3.0	20	85	0	84	48	18	21	11	1.80
316672--316793	33	3.5	33	85	7	154	46	18	22	11	1.81
316824--316878	20	2.8	20	86	2	85	12	20	21	45	1.84
317400--317493	20	4.7	20	82	2	125	21	21	18	39	1.93
317400--317493	41	2.3	40	87	1	125	21	21	18	39	1.93
317490--317535	21	2.2	21	88	0	65	36	17	28	17	1.92
328725--328778	15	3.4	15	71	14	54	62	7	9	20	1.48
328720--328786	33	2.0	33	94	0	116	59	8	8	22	1.55
333081--333161	38	2.1	39	84	11	105	49	2	1	46	1.23
334446--334504	29	2.0	29	100	0	118	13	23	15	47	1.81
341255--341282	14	2.0	14	100	0	56	21	21	42	14	1.88
350990--351034	22	2.0	23	87	12	67	20	15	2	62	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352067--352100	2	17.0	2	100	0	68	50	0	0	50	1.00
355567--355607	2	20.5	2	100	0	82	51	0	0	48	1.00
369698--369750	21	2.5	21	78	6	63	22	26	16	33	1.96
369740--369791	21	2.5	21	81	3	61	42	19	21	17	1.89
369759--369853	41	2.3	41	85	3	120	35	25	18	20	1.95
369822--369909	20	4.4	20	100	0	176	20	30	20	28	1.98
370460--370508	20	2.5	20	100	0	98	34	26	24	14	1.94
370542--370606	14	4.3	14	80	17	76	10	23	20	46	1.81
370719--370796	40	1.9	41	82	7	97	55	14	0	30	1.40
372180--372270	42	2.2	42	86	7	134	21	15	40	21	1.90
372163--372259	21	4.8	20	68	15	65	21	18	37	22	1.95
372606--372678	20	3.7	20	92	0	110	34	28	12	24	1.92
372612--372704	20	4.7	20	90	0	96	35	27	18	18	1.94
372651--372737	19	4.5	18	84	8	84	36	22	22	17	1.94
372711--372789	33	2.4	33	93	0	131	46	22	17	12	1.82
372691--372764	19	4.2	19	75	16	77	44	20	18	16	1.87
372811--372865	20	2.8	19	83	8	65	16	23	23	36	1.94
373524--373614	41	2.2	42	84	5	123	23	15	38	23	1.92
373555--373611	21	2.7	21	71	10	62	24	14	35	26	1.93
373953--373991	20	2.0	20	94	0	69	33	28	12	25	1.93
373979--374031	20	2.7	20	93	0	97	33	26	26	13	1.93
374018--374097	33	2.4	33	89	0	124	47	22	17	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374104--374164	19	3.2	19	83	4	77	16	24	21	37	1.93
374119--374172	20	2.8	19	86	5	72	16	24	24	35	1.95
374104--374172	19	3.6	19	84	3	75	15	23	23	37	1.93
374818--374909	42	2.2	42	84	5	125	21	14	41	22	1.89
374841--374905	21	3.1	21	72	10	71	21	10	43	24	1.84
375246--375284	20	2.0	20	94	0	69	33	28	12	25	1.93
375252--375324	20	3.7	20	83	0	83	35	26	20	17	1.95
375331--375409	33	2.4	33	93	0	131	46	22	17	12	1.82
375272--375384	19	6.1	19	76	13	83	40	21	21	16	1.91
375416--375466	20	2.5	20	90	0	75	15	21	25	37	1.93
376095--376197	41	2.5	41	80	1	107	23	15	38	22	1.92
376125--376215	42	2.2	42	88	2	139	21	15	39	23	1.91
376501--376562	25	2.5	25	97	0	115	54	11	4	29	1.56
376605--376657	20	2.7	20	84	0	70	35	28	24	11	1.90
376669--376737	19	3.9	19	67	18	58	47	17	18	15	1.82
376654--376732	33	2.4	33	95	0	140	45	18	18	16	1.86
376701--376754	19	2.8	19	75	5	56	42	22	18	16	1.89
376744--376826	19	4.6	19	79	14	104	13	19	20	46	1.82
376800--376865	20	3.3	20	69	10	55	16	19	24	39	1.92
377399--377446	18	2.7	18	93	0	87	14	12	45	27	1.81
378766--378803	20	1.9	20	94	0	67	52	21	15	10	1.72
379277--379390	20	5.7	20	77	9	90	23	17	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379277--379389	60	1.9	60	87	3	165	23	17	23	34	1.96
379317--379410	40	2.3	41	83	7	113	22	18	23	36	1.95
379793--379823	2	15.5	2	100	0	62	48	0	0	51	1.00
390731--390783	22	2.5	22	84	3	63	26	7	11	54	1.62
396283--396853	252	2.2	248	88	6	806	28	11	18	41	1.85
397233--397279	18	2.7	18	90	3	69	27	29	8	34	1.87
402050--402135	43	2.0	43	97	0	163	30	24	23	22	1.99
405744--405830	37	2.4	37	82	7	106	39	10	19	31	1.85
412364--412538	95	1.8	95	95	0	314	52	18	14	14	1.75
412656--412735	40	2.0	40	100	0	160	32	25	10	32	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12