genome.fa.s8316.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008316.1 Hibiscus syriacus cultivar Beakdansim tig00111013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2380696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430778--430897	60	2.0	60	93	0	204	25	15	7	51	1.69
434513--434544	2	16.0	2	100	0	64	50	0	0	50	1.00
439752--439778	2	13.5	2	100	0	54	48	0	0	51	1.00
440399--440464	31	2.2	29	81	5	78	53	4	3	39	1.37
445871--445919	17	2.8	16	82	14	53	34	8	26	30	1.86
446486--446670	15	13.1	14	69	19	91	72	3	9	14	1.22
446533--446619	24	3.5	24	73	23	74	74	4	8	12	1.19
446556--446616	26	2.4	25	80	17	65	75	3	8	13	1.15
446607--446655	18	2.8	17	87	6	62	75	2	6	16	1.09
446533--446655	23	5.3	23	68	23	64	74	4	7	13	1.17
446504--446655	13	12.2	12	66	25	59	74	3	8	13	1.18
446754--446823	14	4.8	14	73	15	61	80	2	7	10	1.01
463541--463574	17	2.0	17	88	0	50	58	0	0	41	0.98
467013--467045	15	2.1	16	88	5	50	69	3	18	9	1.28
470708--470828	63	1.9	63	91	0	197	21	22	14	41	1.90
472973--473016	22	2.0	22	81	0	52	36	0	2	61	1.09
474570--474815	19	12.9	19	66	15	80	22	19	21	36	1.95
474551--474815	40	6.9	40	71	12	205	22	19	22	35	1.96
474635--474741	53	2.0	53	98	0	205	21	22	21	34	1.97
474691--474807	21	5.8	21	75	8	98	21	17	25	35	1.95
474688--474807	61	2.0	61	91	0	195	20	18	25	35	1.95
474760--474820	21	3.0	21	69	4	54	22	19	22	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475218--475308	19	4.4	20	76	17	105	30	27	5	36	1.80
475229--475310	44	1.9	41	87	7	119	32	28	6	32	1.82
476107--476139	11	3.1	11	82	8	50	42	0	0	57	0.98
479683--479732	25	2.0	26	84	4	66	40	4	2	54	1.31
509345--509377	16	2.1	16	100	0	66	39	24	12	24	1.89
510744--510783	21	1.9	21	85	10	55	45	2	2	50	1.28
512865--513040	21	8.6	21	73	5	81	22	21	22	34	1.97
512885--513061	61	2.9	61	84	5	248	20	20	24	33	1.97
512905--513061	21	7.6	21	74	12	128	21	21	25	32	1.98
514018--514058	21	2.0	21	90	0	64	31	29	17	21	1.96
514281--514373	21	4.4	21	83	0	114	32	26	20	20	1.97
514281--514373	42	2.2	42	90	0	141	32	26	20	20	1.97
518064--518093	15	2.1	15	93	6	53	33	0	6	60	1.23
527656--527682	11	2.5	11	100	0	54	74	14	0	11	1.08
532717--532760	2	22.0	2	100	0	88	50	0	0	50	1.00
533214--533267	26	2.0	27	89	3	83	50	25	5	18	1.69
543196--543281	30	2.9	30	74	6	93	41	9	6	41	1.64
547599--547627	2	14.5	2	100	0	58	48	0	0	51	1.00
552160--552188	2	14.5	2	100	0	58	48	0	0	51	1.00
552320--552396	39	2.0	39	92	0	127	36	14	10	38	1.80
561045--561125	42	2.0	40	92	7	135	50	8	0	40	1.33
563403--563450	25	1.9	25	95	0	87	29	20	6	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568360--568404	22	2.0	23	83	12	58	55	0	4	40	1.20
568374--568411	20	1.9	20	84	10	51	60	0	2	36	1.11
568628--568695	15	4.3	15	68	26	50	60	0	4	35	1.17
572837--572904	31	2.2	31	86	2	91	52	4	1	41	1.30
572837--572920	31	2.7	31	83	3	80	53	4	1	40	1.30
577860--577934	38	2.0	37	84	5	98	48	4	1	46	1.29
578482--578569	29	3.0	29	78	8	72	12	31	30	25	1.92
578516--578581	29	2.3	29	91	0	105	10	34	28	25	1.89
578927--578985	30	2.0	29	83	3	73	27	15	13	44	1.84
585899--585986	15	5.9	15	94	0	140	54	0	0	45	0.99
585897--586048	30	4.8	30	79	13	144	46	0	3	49	1.20
585985--586542	32	17.5	32	72	19	218	33	0	13	53	1.42
586050--586092	22	2.0	22	100	0	86	34	0	13	51	1.42
586018--586456	54	8.0	54	77	17	458	34	0	12	52	1.42
586161--586213	14	3.5	14	72	18	52	37	0	5	56	1.23
585985--586542	166	3.3	166	83	10	763	33	0	13	53	1.42
585985--586456	198	2.4	197	83	7	680	34	0	12	52	1.42
586216--586258	22	2.0	22	95	0	77	37	0	11	51	1.39
586152--586542	86	4.6	86	88	7	582	33	0	13	53	1.39
586413--586466	14	3.6	14	72	18	54	37	0	7	55	1.28
586436--586578	58	2.5	58	87	4	195	33	0	13	52	1.45
586593--586651	31	1.9	31	92	0	100	42	10	6	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587483--587603	43	2.8	43	86	2	172	28	17	26	27	1.97
587483--587703	43	5.1	43	77	5	155	27	18	23	30	1.97
588046--588111	21	3.2	21	78	2	71	6	37	16	39	1.74
594909--595072	83	2.0	83	80	5	190	32	23	14	28	1.94
595218--595456	41	5.8	42	78	11	217	29	17	18	34	1.94
595218--595493	84	3.3	82	78	9	265	29	18	18	34	1.94
595901--596139	119	2.0	119	99	0	469	31	9	17	41	1.81
597891--597940	26	2.0	25	84	11	66	38	0	2	60	1.09
598852--598926	31	2.3	31	86	6	96	37	33	12	17	1.86
599909--600370	226	2.0	227	83	3	574	41	12	13	32	1.82
600224--600489	108	2.5	108	86	2	329	40	11	12	34	1.79
601085--601226	76	1.9	76	86	0	203	33	16	9	41	1.80
601216--601279	23	2.8	22	85	4	74	39	12	10	37	1.78
601237--601287	23	2.2	23	85	0	66	39	13	7	39	1.74
600970--601403	197	2.2	195	81	1	490	34	15	8	41	1.78
601262--601444	75	2.4	75	83	1	215	37	12	8	42	1.73
611564--611597	12	2.8	12	81	0	50	44	2	17	35	1.64
614834--614878	22	2.0	22	83	8	56	35	4	4	55	1.40
626167--626229	17	3.7	17	100	0	126	23	34	23	17	1.96
626166--626228	11	5.6	11	80	15	76	23	34	23	17	1.96
626791--627119	20	16.5	20	84	5	387	35	25	18	20	1.95
627802--627848	24	2.0	24	87	8	69	25	14	21	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628023--628047	12	2.1	12	100	0	50	72	0	28	0	0.86
630331--630585	19	14.4	19	80	16	316	47	18	20	14	1.83
630331--630585	33	7.2	34	82	13	240	47	18	20	14	1.83
630359--630585	52	4.2	55	89	9	298	47	17	21	14	1.83
630398--630623	71	3.2	71	83	13	311	46	17	20	15	1.85
630331--630607	90	3.2	89	88	8	387	46	18	20	14	1.84
630331--630623	142	2.1	139	91	5	466	46	18	20	15	1.84
630331--630607	52	5.3	55	86	11	290	46	18	20	14	1.84
630614--630715	19	5.6	19	85	12	151	14	23	17	44	1.86
630822--630858	14	2.6	14	91	0	65	45	21	0	32	1.52
632815--632871	14	3.7	14	77	20	60	45	22	21	10	1.82
632796--632888	33	2.8	33	95	0	168	47	21	20	10	1.80
632759--632893	19	7.6	19	76	16	128	45	23	19	11	1.82
632889--633017	19	7.3	19	75	17	125	8	17	28	45	1.77
632889--632980	33	2.8	33	93	3	150	7	18	28	45	1.76
633061--633532	93	5.1	93	97	1	903	46	18	12	22	1.83
633061--633532	185	2.6	185	98	0	917	46	18	12	22	1.83
635239--635328	14	5.7	14	74	23	81	42	23	25	8	1.83
635231--635345	33	3.5	33	95	0	212	45	20	24	9	1.81
635238--635350	19	6.8	18	72	23	88	43	22	24	9	1.83
635346--635431	39	2.4	35	84	11	104	9	20	22	47	1.78
635369--635443	20	3.8	20	85	5	107	12	22	18	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635523--635593	33	2.2	33	92	0	115	47	18	22	11	1.80
635775--635829	22	2.5	22	81	0	74	20	16	40	23	1.91
635975--636167	20	9.6	20	82	5	219	19	19	25	35	1.95
635975--636167	60	3.2	60	83	0	251	19	19	25	35	1.95
636223--636274	20	2.6	20	96	0	95	21	13	26	38	1.90
636531--636587	22	2.6	22	88	0	96	24	33	7	35	1.82
637247--637491	7	35.6	7	70	4	79	47	27	2	22	1.65
637254--637491	28	8.6	28	72	11	125	47	26	2	22	1.65
638226--638255	3	10.0	3	100	0	60	33	0	0	66	0.92
639547--639602	17	3.3	17	100	0	112	23	17	30	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12