genome.fa.s8316.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008316.1 Hibiscus syriacus cultivar Beakdansim tig00111013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2380696

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1404 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2231964--2232034	33	2.2	33	94	0	124	43	25	22	8	1.81
2232052--2232141	14	5.7	14	74	23	81	8	25	23	42	1.83
2232035--2232149	33	3.5	33	92	0	194	8	23	22	45	1.80
2233848--2234316	93	5.1	93	97	1	894	21	12	19	46	1.83
2234360--2234488	19	7.3	19	75	17	125	45	28	17	8	1.77
2234396--2234488	33	2.8	32	91	4	150	46	27	18	7	1.76
2234360--2234488	52	2.5	52	74	14	140	45	28	17	8	1.77
2234484--2234618	19	7.6	19	75	16	128	11	19	23	45	1.82
2234506--2234562	14	3.7	14	77	20	60	10	21	22	45	1.82
2234489--2234581	33	2.8	33	95	0	168	10	20	21	47	1.80
2236508--2236543	14	2.6	14	95	0	63	33	0	22	44	1.53
2236651--2236752	19	5.6	19	84	13	151	44	17	23	14	1.86
2236743--2237057	19	17.9	18	75	16	238	15	20	17	46	1.84
2236759--2237085	33	9.5	33	78	15	201	14	20	18	46	1.84
2236781--2237057	52	5.2	52	89	7	352	14	20	17	46	1.83
2237747--2237956	20	10.5	20	87	2	287	19	20	27	32	1.97
2239488--2239527	20	2.0	20	90	9	64	12	30	30	27	1.93
2240230--2240263	18	1.9	17	88	5	50	55	5	20	17	1.62
2240330--2240386	21	2.7	21	91	0	96	22	26	28	22	1.99
2240704--2240751	24	1.9	24	83	8	60	54	0	12	33	1.38
2242894--2242971	2	39.0	2	100	0	156	50	0	0	50	1.00
2246391--2246424	18	1.9	17	88	5	50	55	5	20	17	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2247240--2247283	22	2.0	22	86	4	63	15	25	29	29	1.96
2250022--2250052	2	15.5	2	93	0	53	45	0	3	51	1.17
2253756--2253811	19	2.8	20	86	5	87	41	10	3	44	1.56
2258158--2258186	11	2.6	11	100	0	58	79	0	6	13	0.93
2259016--2259076	29	2.1	29	93	0	104	32	1	24	40	1.65
2267090--2267114	2	12.5	2	100	0	50	48	0	0	52	1.00
2270207--2270268	33	1.9	31	81	12	72	51	3	3	41	1.34
2276842--2276884	12	3.6	12	81	9	52	46	0	6	46	1.30
2276842--2276883	16	2.9	14	83	13	50	45	0	7	47	1.30
2279797--2279844	26	1.9	25	87	8	71	39	4	2	54	1.32
2283394--2283445	19	2.7	19	93	0	95	32	17	28	21	1.96
2283968--2284011	21	2.0	22	86	4	63	52	4	15	27	1.63
2284991--2285076	23	3.7	23	87	0	118	20	26	23	29	1.99
2288570--2288611	20	2.0	22	86	9	61	47	0	0	52	1.00
2288600--2288637	18	2.2	17	86	13	51	36	5	0	57	1.21
2290715--2290764	25	2.0	25	96	0	91	44	12	22	22	1.85
2293033--2293077	21	2.1	21	87	0	63	31	28	24	15	1.96
2294753--2294965	103	2.1	103	91	1	347	28	13	21	36	1.91
2294982--2295049	23	3.0	23	88	0	91	22	27	25	25	1.99
2298035--2298079	21	2.1	21	87	0	63	31	28	24	15	1.96
2299761--2299971	103	2.0	104	91	1	343	28	11	21	37	1.89
2299991--2300058	23	3.0	23	82	0	82	23	27	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2300751--2300799	25	1.9	25	87	4	71	28	26	8	36	1.85
2301865--2301906	15	2.8	15	96	0	75	54	23	7	14	1.64
2304168--2304206	18	2.2	18	85	0	51	38	25	28	7	1.83
2313153--2313197	13	3.5	13	84	3	56	15	17	46	20	1.84
2314033--2314076	2	22.0	2	100	0	88	50	0	0	50	1.00
2314076--2314120	2	22.5	2	100	0	90	0	0	48	51	1.00
2314572--2315053	182	2.7	180	90	1	761	41	14	17	26	1.88
2317425--2317469	21	2.1	21	91	0	72	44	11	31	13	1.78
2317489--2317615	66	1.9	66	80	3	148	33	3	40	22	1.73
2321005--2321482	200	2.4	200	87	4	680	40	14	14	30	1.86
2321854--2321915	23	2.7	23	82	0	70	37	14	4	43	1.67
2322678--2322762	34	2.4	34	80	7	91	38	0	2	58	1.11
2322686--2322760	31	2.4	31	82	6	89	38	0	1	60	1.06
2322901--2322954	17	3.2	17	72	0	54	31	0	3	64	1.11
2324482--2324529	21	2.3	21	85	0	60	25	39	12	22	1.89
2324533--2324626	21	4.5	21	90	5	120	19	35	26	19	1.95
2325170--2325238	33	2.1	34	88	2	104	56	2	1	39	1.23
2325145--2325247	28	3.5	28	77	13	100	52	4	1	40	1.34
2325639--2326136	127	3.9	128	98	1	957	32	19	25	22	1.98
2326205--2326245	8	5.2	8	82	5	57	36	29	0	34	1.58
2334238--2334342	54	1.9	54	84	0	138	19	25	24	30	1.98
2337384--2337623	120	2.0	120	100	0	480	31	5	33	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2339124--2339166	21	2.0	21	86	0	59	30	27	25	16	1.97
2339146--2339296	67	2.3	67	85	6	191	25	27	27	19	1.99
2339602--2339673	29	2.5	29	90	0	108	37	11	12	38	1.79
2339687--2339751	29	2.2	32	78	13	75	35	9	21	33	1.85
2346011--2346053	21	2.0	21	86	0	59	30	27	25	16	1.97
2346011--2346180	66	2.6	66	84	7	195	26	27	26	20	1.99
2346485--2346556	29	2.5	29	90	0	108	37	11	12	38	1.79
2346569--2346627	30	1.9	31	86	3	84	37	6	22	33	1.80
2346847--2346913	22	3.0	22	100	0	134	19	26	26	26	1.99
2348555--2348602	25	1.9	25	91	0	78	52	6	8	33	1.57
2348699--2348750	27	1.9	27	84	0	68	42	1	11	44	1.51
2350682--2350716	14	2.5	14	100	0	70	28	31	25	14	1.95
2352449--2352546	16	6.2	16	75	11	85	47	34	12	5	1.63
2355773--2355842	3	23.7	3	91	8	117	0	35	0	64	0.94
2359022--2359165	71	2.0	71	100	0	288	45	11	12	30	1.77
2363972--2364006	17	2.1	17	89	10	54	17	8	8	65	1.44
2379172--2379228	20	2.9	20	94	2	98	22	28	10	38	1.87
2380156--2380460	158	2.0	154	86	8	426	40	8	11	39	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!