genome.fa.s8353.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008353.1 Hibiscus syriacus cultivar Beakdansim tig00111088_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2583621

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282875--282907	6	5.5	6	100	0	66	33	51	15	0	1.43
282848--282884	18	2.1	18	89	0	56	35	35	2	27	1.71
283397--283464	29	2.3	29	90	5	102	0	16	55	27	1.41
283396--283468	35	2.1	35	94	0	128	0	15	56	28	1.40
283396--283468	6	12.5	6	88	5	96	0	15	56	28	1.40
283557--283623	19	3.3	19	65	15	53	32	22	19	25	1.97
284013--284038	2	13.0	2	100	0	52	50	0	0	50	1.00
284304--284365	31	2.0	31	96	0	115	24	35	14	25	1.93
288877--288901	6	4.2	6	100	0	50	36	32	16	16	1.90
291395--291435	17	2.4	17	100	0	82	12	24	9	53	1.68
292371--292411	21	2.0	21	95	0	73	43	4	7	43	1.53
292768--292823	29	1.9	29	100	0	112	21	42	25	10	1.85
292770--292839	29	2.4	29	90	2	104	21	40	25	12	1.89
292887--292943	10	5.7	10	84	15	82	24	36	28	10	1.88
292886--292943	20	2.9	20	100	0	116	24	36	29	10	1.88
292921--293012	33	2.8	32	85	3	105	28	28	34	8	1.87
293059--293118	23	2.6	23	89	0	84	13	36	25	25	1.92
296697--296731	2	17.5	2	87	0	52	45	5	0	48	1.26
301973--301997	13	1.9	13	100	0	50	56	0	0	44	0.99
302150--302216	20	3.4	19	69	17	55	76	1	10	11	1.10
302867--302909	19	2.3	18	81	14	52	6	0	20	72	1.08
303484--303522	19	2.0	21	90	10	64	74	5	7	12	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303627--303891	37	7.2	36	74	12	166	46	6	1	45	1.39
303643--303805	35	4.6	35	81	9	161	45	6	3	44	1.45
303868--303921	12	4.1	12	74	21	54	50	11	0	38	1.38
303871--303927	30	1.9	30	92	7	98	49	12	0	38	1.41
312104--312161	25	2.3	25	93	0	98	18	27	12	41	1.86
316737--316771	7	4.7	7	89	10	52	31	0	0	68	0.90
316737--316785	15	3.2	15	85	8	64	28	4	0	67	1.09
322692--322725	16	2.1	16	88	5	50	41	23	0	35	1.55
322915--322980	21	3.0	22	93	4	107	25	27	27	19	1.99
324626--324670	21	2.1	21	87	0	63	15	24	28	31	1.96
327651--327684	16	2.1	16	88	5	50	41	23	0	35	1.55
327876--327939	23	2.8	22	92	4	101	23	31	26	18	1.98
329463--329506	21	2.2	20	87	4	61	15	25	27	31	1.96
337199--337244	24	2.0	23	83	12	58	45	2	0	52	1.13
339354--339855	280	1.8	274	84	7	672	41	19	11	27	1.86
351779--351854	29	2.6	29	91	0	125	15	36	26	21	1.93
355088--355123	14	2.5	14	95	4	63	69	0	0	30	0.89
355334--355380	21	2.2	21	84	0	67	19	27	17	36	1.93
355376--355467	20	4.6	20	82	2	121	36	19	21	21	1.95
356037--356083	20	2.3	20	92	0	76	36	21	19	23	1.95
356098--356184	20	4.4	20	86	1	95	14	17	22	44	1.85
356149--356192	20	2.2	20	87	0	61	13	13	20	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358062--358165	20	5.5	20	84	13	157	40	21	20	18	1.92
358065--358186	34	3.4	34	85	12	172	41	20	20	17	1.90
358062--358203	74	1.9	73	91	1	230	40	20	20	18	1.91
358212--358258	20	2.3	20	81	0	58	23	19	23	34	1.97
358232--358325	33	2.8	34	80	3	118	13	19	23	43	1.86
358809--358907	21	4.7	21	75	3	83	23	33	20	23	1.97
358806--358916	42	2.6	41	77	8	116	21	36	18	23	1.95
360270--360305	14	2.6	14	90	0	54	30	0	22	47	1.52
360440--360535	33	2.8	33	87	6	122	13	23	19	42	1.87
360507--360595	20	4.4	20	87	2	126	16	22	24	35	1.95
363040--363086	24	2.0	24	95	0	85	34	17	21	27	1.95
363044--363095	24	2.2	24	85	0	68	36	19	19	25	1.95
363837--363964	40	3.2	38	75	17	109	22	20	21	35	1.96
363856--363964	41	2.7	40	85	4	148	21	21	21	36	1.95
363858--363964	20	5.3	20	84	4	144	21	20	20	37	1.95
363961--364006	21	2.2	21	88	0	65	36	17	28	17	1.92
364453--364492	15	2.7	15	96	0	71	10	22	12	55	1.67
373772--373900	20	7.2	20	70	25	99	46	18	23	11	1.82
373819--373907	14	5.6	14	70	23	61	43	21	24	10	1.83
373770--373929	19	9.1	19	68	21	107	46	18	23	11	1.82
373798--373924	33	3.8	33	94	1	209	45	21	22	11	1.82
373925--374017	19	4.7	19	82	5	96	10	18	20	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373942--374026	20	4.2	20	85	7	95	11	18	18	50	1.77
374594--374845	20	12.6	19	75	15	172	19	18	23	38	1.94
374596--374906	41	7.8	40	82	7	301	19	18	23	38	1.93
374854--374906	20	2.7	20	91	5	81	13	18	24	43	1.86
379449--379492	16	2.7	17	82	6	56	59	4	0	36	1.18
379531--379629	20	5.2	19	68	12	60	47	4	5	43	1.44
380502--380574	24	3.2	24	68	16	64	21	0	23	54	1.45
389336--389684	180	1.9	180	97	1	655	31	12	27	28	1.93
391919--391958	10	4.1	10	90	3	55	30	0	0	70	0.88
391922--391956	15	2.2	17	90	10	56	31	0	0	68	0.90
406040--406071	16	2.0	16	93	0	55	56	0	3	40	1.15
408594--408962	20	18.5	20	84	5	451	34	26	18	20	1.96
409645--409691	24	2.0	24	87	8	69	25	14	21	38	1.92
409866--409890	12	2.1	12	100	0	50	72	0	28	0	0.86
412172--412445	19	15.4	19	81	15	354	47	18	20	14	1.83
412172--412467	71	4.2	74	82	13	314	46	18	20	14	1.83
412200--412467	109	2.5	104	90	6	446	46	17	21	14	1.83
412172--412483	161	2.0	157	91	5	502	46	18	20	15	1.84
412200--412467	52	5.0	52	90	4	437	46	17	21	14	1.83
412474--412575	19	5.6	19	85	12	151	14	23	17	44	1.86
412681--412717	14	2.6	14	91	0	65	45	21	0	32	1.52
414101--414168	21	3.2	21	65	2	55	20	20	35	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414678--414734	14	3.7	14	77	20	60	45	22	21	10	1.82
414659--414751	33	2.8	33	95	0	168	47	21	20	10	1.80
414622--414756	19	7.6	19	76	16	128	45	23	19	11	1.82
414752--414880	19	7.3	19	75	17	125	8	17	28	45	1.77
414752--414843	33	2.8	33	93	3	150	7	18	28	45	1.76
414924--415395	93	5.1	93	98	1	912	46	18	12	22	1.83
414924--415395	185	2.6	185	99	0	926	46	18	12	22	1.83
417102--417191	14	5.7	14	74	23	81	42	23	25	8	1.83
417094--417208	33	3.5	33	95	0	212	45	20	24	9	1.81
417101--417213	19	6.8	18	72	23	88	43	22	24	9	1.83
417225--417279	14	3.6	14	73	21	56	9	25	23	41	1.83
417209--417279	33	2.2	33	94	0	124	8	22	25	43	1.81
417220--417301	33	2.5	33	89	2	119	9	25	21	42	1.84
417232--417320	20	4.8	20	72	19	75	12	24	19	43	1.85
417400--417470	33	2.2	33	92	0	115	47	18	22	11	1.80
417651--417705	22	2.5	22	81	0	74	20	16	40	23	1.91
417851--418043	20	9.6	20	82	5	219	19	19	25	35	1.95
417851--418043	60	3.2	60	83	0	251	19	19	25	35	1.95
425538--425565	2	14.0	2	100	0	56	50	0	0	50	1.00
428006--428031	13	2.0	13	100	0	52	30	7	15	46	1.74
428262--428413	23	6.6	23	87	0	196	22	26	25	25	2.00
434739--434769	2	15.5	2	100	0	62	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440344--440464	43	2.8	43	96	0	215	48	14	9	27	1.74
441158--441202	18	2.5	18	88	0	72	8	40	22	28	1.84
443066--443328	142	1.9	142	90	0	418	23	28	25	22	1.99
444974--445011	18	2.1	18	100	0	76	55	34	5	5	1.45
449554--449630	31	2.5	31	81	10	79	40	6	2	50	1.42
451762--451856	47	2.0	48	83	6	122	38	14	17	28	1.90
452924--453023	34	3.1	30	80	13	101	31	4	6	59	1.40
456839--456879	22	2.0	21	85	9	57	21	0	7	70	1.11
465315--465371	30	1.9	30	85	0	78	35	10	22	31	1.88
469092--469118	14	1.9	14	100	0	54	74	14	0	11	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13