genome.fa.s8353.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008353.1 Hibiscus syriacus cultivar Beakdansim tig00111088_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2583621

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1447 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469106--469144	10	3.9	10	82	0	51	66	15	2	15	1.36
469102--469149	20	2.4	20	92	0	78	64	14	4	16	1.43
474697--474739	2	21.5	2	100	0	86	48	0	0	51	1.00
501229--501265	16	2.2	17	90	4	58	16	10	45	27	1.80
501516--501541	2	13.0	2	100	0	52	50	0	0	50	1.00
505949--506011	29	2.2	29	80	5	74	61	0	3	34	1.12
505994--506039	16	2.7	17	83	6	58	73	4	0	21	1.00
505994--506030	9	4.3	9	86	13	51	72	5	0	21	1.04
507218--507342	58	2.2	57	83	8	155	39	5	0	55	1.24
507224--507356	29	4.5	30	77	6	119	38	5	0	56	1.22
507372--507446	31	2.5	31	91	2	116	52	1	6	40	1.36
507411--507470	24	2.5	23	84	10	75	53	0	8	38	1.31
507361--507703	30	11.6	29	74	11	225	50	0	8	41	1.35
510542--510583	22	2.0	22	85	4	59	23	14	23	38	1.92
518278--518311	15	2.3	15	94	0	59	29	17	29	23	1.97
531979--532010	16	1.9	17	93	6	57	18	9	21	50	1.75
557677--557736	30	1.9	30	83	10	75	35	20	1	43	1.62
562125--562225	28	3.5	28	74	12	89	37	7	10	43	1.69
562647--562683	3	12.3	3	94	0	65	64	2	32	0	1.07
567947--568191	43	5.7	43	82	4	226	25	17	23	33	1.96
568584--568632	21	2.3	21	96	0	89	2	34	22	40	1.66
576314--576476	41	3.9	42	76	7	127	34	21	17	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576400--576500	41	2.5	41	88	0	157	35	23	17	22	1.95
578239--578263	12	2.1	12	100	0	50	44	32	16	8	1.76
578881--578921	16	2.6	16	75	17	50	26	9	24	39	1.86
585577--585610	16	2.1	16	89	10	52	35	35	17	11	1.87
585820--585892	2	36.5	2	100	0	146	50	0	0	49	1.00
594216--594255	20	2.0	20	90	0	62	25	25	27	22	2.00
594194--594255	23	2.9	21	80	7	63	20	24	30	24	1.99
598056--598108	21	2.5	20	82	11	54	35	9	1	52	1.45
608099--608141	20	2.1	21	87	8	63	18	13	0	67	1.23
608098--608147	20	2.5	20	75	15	59	18	18	0	64	1.30
611965--611998	17	2.1	16	88	5	50	14	8	0	76	1.01
615687--615716	14	2.1	14	100	0	60	33	30	16	20	1.94
635193--635239	14	3.4	14	80	11	60	55	0	0	44	0.99
635234--635297	27	2.4	28	78	7	69	59	7	0	32	1.26
636057--636085	2	14.5	2	100	0	58	51	0	0	48	1.00
637897--637943	21	2.2	21	96	0	85	29	27	27	14	1.96
637930--637969	9	4.2	9	81	12	53	37	32	17	12	1.87
637931--637969	20	2.0	20	94	0	69	38	30	17	12	1.88
637972--638028	28	2.0	28	100	0	114	24	21	33	21	1.97
638047--638151	29	3.6	29	93	0	165	16	30	31	21	1.95
638456--638486	14	2.2	14	100	0	62	12	32	29	25	1.93
638487--638537	26	2.0	26	88	3	77	45	11	35	7	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638693--638781	41	2.2	41	78	8	92	42	1	10	46	1.45
638721--638852	45	3.0	45	80	14	134	40	0	12	47	1.41
638893--638969	34	2.3	33	81	14	88	40	0	12	46	1.42
639015--639061	16	3.0	16	84	9	53	29	0	10	59	1.31
639036--639066	15	2.1	14	94	5	53	38	0	6	54	1.26
641215--641247	17	1.9	17	93	0	57	45	12	6	36	1.66
641232--641300	22	3.0	22	73	19	77	47	7	4	40	1.51
641429--641525	38	2.6	38	80	7	103	48	5	3	43	1.40
641455--641682	14	17.1	13	74	18	129	46	7	2	43	1.45
641455--641682	26	9.2	26	74	12	183	46	7	2	43	1.45
641471--641740	124	2.2	123	92	2	445	46	8	1	43	1.45
644577--644635	26	2.3	24	78	16	64	40	3	8	47	1.51
645439--645501	28	2.2	30	91	5	103	57	11	0	31	1.34
645443--645508	28	2.4	28	85	10	98	56	10	0	33	1.34
645478--645526	21	2.3	21	85	3	71	53	16	0	30	1.43
645934--646013	27	2.8	29	90	9	137	20	38	23	17	1.93
646267--646304	20	1.9	20	94	0	67	21	50	13	15	1.78
646359--646469	29	3.8	29	95	0	186	16	35	32	16	1.91
647548--647678	43	3.1	43	79	8	135	35	18	18	27	1.94
649404--649463	31	1.9	31	93	0	102	43	6	6	43	1.57
650582--650640	25	2.4	25	100	0	118	49	0	0	50	1.00
650595--650641	12	3.5	15	72	27	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650848--650914	24	2.8	23	80	14	66	50	0	1	47	1.10
651720--651753	2	17.5	2	93	6	61	52	0	0	47	1.00
654289--654989	85	8.2	85	86	1	866	24	16	23	35	1.95
656933--656975	21	2.0	21	95	0	77	48	2	0	48	1.14
657050--657113	28	2.4	26	82	7	67	56	1	0	42	1.09
657050--657104	28	2.0	28	92	0	92	54	1	0	43	1.10
657057--657103	14	3.4	14	77	11	51	53	2	0	44	1.12
664807--664931	63	2.0	63	95	0	223	41	20	16	20	1.90
682115--682216	53	1.9	53	87	0	150	38	3	15	42	1.66
685924--685988	3	21.7	3	90	0	103	61	0	1	36	1.05
686317--687210	113	7.9	113	96	0	1619	30	18	13	37	1.89
687945--688847	83	10.9	83	94	2	1523	36	22	13	27	1.92
689394--689439	16	2.6	17	90	10	67	54	4	8	32	1.51
689412--689448	16	2.3	16	90	0	56	54	5	8	32	1.53
689771--689825	13	4.1	13	88	4	74	1	14	0	83	0.73
689772--689807	19	1.9	19	94	5	65	0	8	0	91	0.41
689786--689826	14	3.0	14	96	3	75	4	14	0	80	0.87
700905--700944	9	4.4	9	90	9	64	60	0	0	40	0.97
702530--702633	3	34.7	3	90	0	109	55	0	1	42	1.10
702530--702642	24	4.7	24	86	0	136	54	0	1	43	1.10
707030--707071	22	1.9	22	95	0	75	42	9	14	33	1.78
712322--712346	4	6.2	4	100	0	50	24	24	0	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713923--714004	30	2.8	30	83	1	94	35	29	19	15	1.93
715243--715400	64	2.5	63	82	7	176	28	20	16	34	1.95
718618--718700	30	2.8	30	87	1	114	34	30	18	16	1.93
719927--720087	64	2.5	62	84	8	189	27	21	17	34	1.95
746959--747007	24	2.0	24	84	7	64	46	4	0	48	1.20
748787--748866	40	2.1	39	88	4	117	21	8	10	60	1.56
757131--757190	24	2.5	24	77	0	75	45	8	25	21	1.80
757169--757224	27	2.1	27	83	6	69	37	7	33	21	1.81
759224--759261	2	19.5	2	83	5	51	52	5	0	42	1.24
763439--763479	21	1.9	21	85	5	55	36	0	2	60	1.10
764929--764961	15	2.1	16	88	5	50	21	6	15	57	1.59
769619--769683	16	4.1	16	87	0	103	53	23	15	7	1.67
769845--769869	13	1.9	13	100	0	50	40	28	16	16	1.89
769881--769969	23	3.8	23	83	1	97	26	23	21	28	1.99
770839--770884	14	3.3	14	90	0	74	50	23	15	10	1.75
770819--770868	24	2.1	24	85	7	66	56	18	12	14	1.68
771442--771485	21	2.1	21	86	0	61	29	20	6	43	1.78
773387--773419	17	1.9	17	88	11	50	30	3	3	63	1.24
774967--775121	71	2.2	71	94	1	267	28	13	23	34	1.93
780271--780374	28	3.6	27	67	22	77	44	7	3	44	1.51
780751--780817	2	35.0	2	86	8	95	50	0	2	46	1.16
785349--785374	13	2.0	13	100	0	52	38	7	23	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
785916--785963	21	2.2	22	81	3	53	60	12	6	20	1.54
786448--786473	13	2.0	13	100	0	52	38	7	23	30	1.83
787015--787062	21	2.2	22	81	3	53	60	12	6	20	1.54
794046--794187	59	2.4	59	81	5	162	41	7	16	34	1.76
802416--802442	2	13.5	2	100	0	54	48	0	0	51	1.00
806092--806334	56	4.3	56	88	2	328	27	17	15	40	1.89
809475--809520	25	1.9	24	86	8	67	41	0	8	50	1.33
810607--811775	585	2.0	584	99	0	2329	28	15	14	41	1.87
812354--812422	30	2.3	30	87	0	102	39	17	5	37	1.74
812570--812599	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13