genome.fa.s8387.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008387.1 Hibiscus syriacus cultivar Beakdansim tig00111151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2491990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1390 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2312783--2312832	2	25.0	2	76	15	50	44	2	4	50	1.32
2312783--2312832	7	6.2	8	75	15	50	44	2	4	50	1.32
2317418--2317615	22	8.0	26	73	20	133	38	4	8	48	1.51
2317418--2317512	42	2.3	42	83	5	113	36	6	7	49	1.56
2317418--2317625	55	3.7	54	78	16	155	38	3	8	49	1.51
2317418--2317625	13	16.2	13	70	18	143	38	3	8	49	1.51
2317474--2317625	22	6.7	22	81	11	134	39	2	8	49	1.47
2320414--2320494	24	3.4	24	100	0	162	32	17	24	25	1.97
2321240--2321286	13	3.4	14	82	11	53	38	4	25	31	1.75
2321595--2321659	7	9.4	7	94	3	114	32	0	26	41	1.56
2324066--2324201	64	2.1	64	85	5	177	25	22	18	33	1.97
2326161--2326203	21	2.1	21	91	4	70	25	23	16	34	1.95
2326166--2326210	20	2.2	21	88	4	65	31	20	13	35	1.91
2326182--2326295	57	2.0	57	87	3	167	35	17	14	33	1.90
2326302--2326353	20	2.6	20	85	11	79	21	15	28	34	1.94
2326353--2326398	20	2.3	20	84	0	65	41	17	21	19	1.90
2326392--2326507	57	2.0	58	93	1	198	37	21	15	25	1.93
2327012--2327424	134	3.1	131	81	6	483	34	21	15	28	1.94
2328232--2328299	12	4.8	13	80	18	50	77	1	14	5	1.02
2328246--2328299	16	3.6	15	80	20	60	77	0	14	7	0.97
2329956--2330304	130	2.7	131	82	2	407	31	11	17	40	1.84
2330834--2330894	2	30.5	2	100	0	122	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2332842--2332873	15	2.0	17	88	11	50	53	12	0	34	1.39
2335441--2335498	7	8.4	7	88	3	91	29	27	27	15	1.96
2335496--2335524	14	2.1	14	100	0	58	6	20	51	20	1.70
2342702--2342739	13	2.8	14	84	4	51	31	28	23	15	1.96
2342730--2342767	17	2.2	17	100	0	76	13	23	44	18	1.85
2342779--2342844	9	7.0	9	76	10	69	31	31	22	13	1.93
2349947--2349974	2	14.0	2	100	0	56	50	0	0	50	1.00
2350819--2350874	27	2.0	28	86	3	78	60	1	0	37	1.07
2351962--2351996	17	2.1	17	100	0	70	31	5	5	57	1.46
2353187--2353373	69	2.6	72	84	10	229	56	12	0	31	1.40
2353193--2353373	76	2.5	69	85	7	229	56	12	0	30	1.40
2353193--2353398	76	2.8	75	77	14	225	57	10	1	30	1.42
2358898--2358935	19	2.0	19	89	0	58	57	10	0	31	1.32
2362418--2362469	20	2.6	21	82	14	65	32	19	13	34	1.90
2365588--2365634	23	2.0	23	95	0	85	19	12	6	61	1.52
2372007--2372105	29	3.4	29	66	18	78	44	4	20	31	1.70
2378602--2378634	16	2.1	15	94	5	57	60	0	0	39	0.97
2382919--2382975	20	2.9	19	76	7	69	29	8	36	24	1.86
2385281--2385432	39	3.9	38	78	6	144	19	26	21	32	1.97
2385787--2385841	2	27.5	2	92	0	92	45	0	3	50	1.19
2396740--2396822	43	1.9	43	82	4	105	36	22	12	28	1.90
2396759--2396862	44	2.4	43	78	1	109	39	24	11	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2396892--2396975	43	1.9	44	85	2	116	32	22	16	28	1.96
2396935--2397009	39	1.9	39	86	5	107	25	21	20	33	1.97
2405488--2405552	21	3.1	21	70	18	64	27	13	20	38	1.90
2405488--2405570	41	2.0	41	81	9	98	30	12	19	38	1.88
2406919--2406954	19	1.9	19	94	5	65	72	5	0	22	1.05
2407790--2407844	18	2.9	18	81	5	65	0	23	9	67	1.19
2408317--2408411	3	31.7	3	91	0	154	62	0	3	34	1.11
2408729--2409618	113	7.9	113	91	1	1396	30	18	14	36	1.91
2408729--2409607	224	3.9	225	96	1	1543	30	18	14	36	1.91
2408729--2409607	337	2.6	337	91	1	1413	30	18	14	36	1.91
2410341--2410803	83	5.6	83	96	1	804	36	21	14	28	1.92
2411349--2411402	19	2.5	21	70	29	51	57	7	5	29	1.49
2411737--2411783	19	2.5	18	93	6	76	0	14	0	85	0.61
2411737--2411783	9	5.0	9	92	7	76	0	14	0	85	0.61
2413666--2413705	16	2.5	16	100	0	80	52	15	7	25	1.68
2423220--2423255	19	1.9	19	94	5	65	72	5	0	22	1.05
2424625--2424728	3	34.7	3	92	3	174	63	0	1	34	1.06
2425317--2425464	79	1.9	78	90	1	233	38	25	15	20	1.92
2427120--2427172	24	2.3	24	84	9	67	50	5	0	43	1.25
2432872--2432919	3	15.7	3	91	4	78	66	0	2	31	1.03
2434156--2434308	77	2.0	78	83	10	197	41	5	8	44	1.57
2449718--2450092	205	1.8	205	85	4	531	35	12	8	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2450407--2450604	97	2.0	97	88	0	288	26	15	16	42	1.87
2460935--2460993	22	2.7	22	94	0	109	25	16	23	33	1.96
2469328--2469367	21	1.9	21	89	0	62	10	25	40	25	1.86
2486560--2486604	20	2.3	20	92	3	74	33	22	26	17	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!