genome.fa.s8387.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008387.1 Hibiscus syriacus cultivar Beakdansim tig00111151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2491990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1390 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1257038--1257138	37	2.7	37	84	0	121	39	14	13	31	1.86
1257183--1257743	284	2.0	283	97	0	1059	29	16	21	32	1.95
1257816--1257869	19	2.9	18	78	13	56	35	0	0	64	0.94
1258129--1258166	15	2.3	16	86	13	51	23	0	0	76	0.79
1258144--1258185	13	3.2	14	83	12	54	26	2	0	71	0.98
1268606--1268635	14	2.1	14	93	0	51	83	0	13	3	0.77
1269194--1269236	20	2.2	20	86	0	59	30	13	18	37	1.90
1271671--1271706	18	1.9	19	88	5	56	8	19	0	72	1.10
1275034--1275111	8	9.5	8	77	13	70	82	5	11	1	0.89
1275025--1275076	16	3.2	16	88	0	77	82	1	15	0	0.75
1275036--1275098	13	4.9	13	79	11	60	82	4	12	0	0.82
1275052--1275111	21	2.9	21	85	7	79	80	6	11	1	0.98
1275043--1275111	29	2.4	30	79	13	81	81	5	11	1	0.93
1276573--1277939	106	13.0	106	90	3	2014	34	24	18	22	1.96
1276573--1277939	416	3.3	416	90	2	2005	34	24	18	22	1.96
1278672--1278773	37	2.8	36	81	3	114	40	15	12	31	1.85
1279243--1279289	24	1.9	25	86	4	69	31	2	0	65	1.04
1279335--1279359	2	12.5	2	100	0	50	48	0	0	52	1.00
1279482--1279518	4	8.8	4	94	5	56	21	0	0	78	0.75
1279482--1279518	18	2.2	18	90	9	51	21	0	0	78	0.75
1279609--1279652	19	2.4	19	82	14	56	18	9	0	72	1.10
1281108--1281140	6	5.3	6	96	3	57	66	3	30	0	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1286891--1286960	34	2.1	32	86	5	95	21	31	14	32	1.93
1287244--1287285	21	2.0	21	95	0	75	26	28	21	23	1.99
1287387--1287467	21	4.1	21	75	19	84	12	27	40	19	1.87
1287411--1287440	15	2.0	15	100	0	60	13	26	33	26	1.93
1287389--1287461	36	2.0	37	89	2	112	13	27	38	20	1.90
1287773--1287818	21	2.2	21	96	0	83	34	2	8	54	1.43
1288892--1288939	19	2.5	20	82	3	62	29	12	6	52	1.63
1289799--1289868	34	2.1	32	86	5	95	21	31	14	32	1.93
1290152--1290193	21	2.0	21	95	0	75	26	28	21	23	1.99
1290229--1290269	20	2.0	20	100	0	82	14	29	41	14	1.86
1290295--1290375	21	4.1	21	75	19	84	12	27	40	19	1.87
1290319--1290348	15	2.0	15	100	0	60	13	26	33	26	1.93
1290297--1290369	36	2.0	37	89	2	112	13	27	38	20	1.90
1303810--1303876	27	2.4	27	85	2	80	40	1	0	58	1.07
1305551--1305667	35	3.2	36	87	6	166	42	19	5	31	1.75
1310140--1310258	35	3.3	36	88	5	170	44	18	4	32	1.69
1310187--1310250	20	3.4	20	66	29	59	45	18	3	32	1.65
1326087--1326122	17	2.1	18	89	5	56	52	0	0	47	1.00
1332201--1332283	22	3.8	22	72	0	76	22	19	22	34	1.96
1338867--1338908	22	2.0	20	82	17	50	57	2	9	30	1.44
1349865--1349912	14	3.5	14	91	2	62	29	31	16	22	1.96
1349877--1349912	14	2.6	14	100	0	72	27	36	13	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1359304--1359354	25	2.1	24	85	3	66	60	1	1	35	1.19
1365290--1365361	37	2.0	37	91	2	119	12	12	37	37	1.81
1365327--1365386	27	2.2	27	93	0	102	13	10	33	43	1.77
1367714--1367923	84	2.7	76	81	10	235	44	13	16	25	1.84
1369660--1369700	18	2.3	18	86	0	55	26	17	17	39	1.91
1380135--1380187	18	2.7	18	78	18	61	22	33	13	30	1.92
1385719--1385928	64	3.2	64	81	8	205	26	15	25	32	1.96
1385825--1385876	19	2.8	19	80	8	63	25	13	34	26	1.93
1385889--1385928	21	1.9	21	94	0	71	22	15	30	32	1.94
1388441--1388520	24	3.5	23	77	14	94	27	23	26	22	2.00
1388419--1388540	44	2.8	42	74	15	113	25	21	27	26	1.99
1394338--1394500	64	2.5	62	81	7	186	27	15	26	30	1.96
1394447--1394497	19	2.7	19	85	8	70	25	15	35	23	1.94
1394511--1394550	21	1.9	21	94	0	71	22	15	30	32	1.94
1396579--1396658	40	2.0	40	100	0	160	35	15	17	32	1.91
1397609--1397670	30	2.1	30	96	0	115	22	30	19	27	1.98
1404007--1404062	27	2.1	27	93	0	94	37	14	3	44	1.62
1404220--1404248	2	14.5	2	100	0	58	48	0	0	51	1.00
1405727--1405886	60	2.7	59	80	7	153	35	20	2	41	1.66
1418432--1418494	29	2.1	30	94	2	110	36	0	33	30	1.58
1420746--1421084	157	2.2	156	87	5	481	49	6	16	27	1.71
1437934--1437964	15	2.1	15	93	0	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1443987--1444017	16	1.9	16	100	0	62	25	6	19	48	1.72
1444039--1444080	19	2.2	19	86	0	57	16	9	26	47	1.77
1450522--1450591	30	2.3	29	80	4	77	17	31	17	34	1.93
1452974--1453003	2	15.5	2	93	6	53	50	0	0	50	1.00
1453416--1453466	2	25.5	2	83	0	66	49	7	0	43	1.32
1460313--1460347	2	17.5	2	93	0	61	51	2	0	45	1.16
1461538--1461633	31	3.1	30	84	3	111	39	7	13	39	1.72
1462439--1462508	37	1.9	36	85	2	95	65	4	5	24	1.32
1465522--1465736	111	1.9	112	81	2	247	42	8	8	40	1.65
1467820--1467857	18	2.1	18	100	0	76	50	15	13	21	1.78
1468587--1468620	15	2.2	16	89	5	52	70	0	2	26	1.01
1469298--1469337	20	2.0	20	85	9	55	52	20	0	27	1.46
1471342--1471402	30	2.0	30	90	0	95	26	13	11	49	1.75
1471540--1471607	27	2.5	28	85	2	93	19	25	14	41	1.89
1473290--1473342	21	2.7	20	82	5	63	16	24	24	33	1.96
1474823--1474856	15	2.2	16	89	5	52	70	2	2	23	1.15
1475588--1475660	20	3.7	19	80	5	83	32	20	20	26	1.97
1475975--1476012	18	2.1	18	85	9	51	71	10	2	15	1.25
1482520--1482590	33	2.1	34	94	2	126	42	0	0	57	0.98
1482957--1482994	19	2.0	19	85	10	51	2	18	47	31	1.62
1485063--1485095	2	16.5	2	93	0	57	45	0	0	54	0.99
1498514--1498576	33	1.9	33	100	0	126	22	25	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1502929--1502962	12	2.8	12	95	0	59	50	0	32	17	1.47
1503926--1503977	21	2.3	24	74	19	65	32	15	26	25	1.95
1503932--1503984	21	2.5	21	93	0	88	32	18	22	26	1.97
1503994--1504035	21	2.0	21	95	0	75	23	26	35	14	1.93
1510217--1510250	17	2.0	17	100	0	68	23	17	35	23	1.95
1514165--1514199	6	5.8	6	96	0	61	51	0	48	0	1.00
1515269--1515351	34	2.4	34	97	0	157	42	4	4	48	1.45
1518324--1518400	19	3.5	23	79	15	99	36	16	20	25	1.94
1518619--1518659	19	2.2	19	95	0	73	36	4	29	29	1.78
1519198--1519222	2	12.5	2	100	0	50	48	0	0	52	1.00
1520565--1521098	44	12.2	44	75	6	377	28	17	20	32	1.96
1520865--1521066	86	2.3	86	74	5	201	29	16	20	33	1.95
1520865--1521098	42	5.5	43	73	10	133	28	17	20	33	1.95
1521667--1521752	42	2.0	42	86	0	118	36	19	15	29	1.92
1524104--1524144	2	21.0	2	95	5	75	48	0	0	51	1.00
1526957--1527379	43	9.9	44	70	9	261	35	20	16	27	1.94
1526957--1527234	129	2.1	129	81	8	316	34	20	15	28	1.94
1527030--1527360	85	3.9	83	77	7	247	35	20	16	27	1.94
1527159--1527333	82	2.1	84	84	5	230	35	21	16	27	1.94
1527189--1527351	82	2.0	82	83	4	204	35	22	15	26	1.94
1535632--1535834	20	10.1	20	72	9	135	38	22	18	20	1.93
1535632--1535820	101	1.9	101	80	4	220	39	22	18	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1535693--1535834	40	3.5	40	91	0	230	38	21	19	21	1.94
1535830--1535859	14	2.1	14	93	0	51	36	0	23	40	1.55
1535975--1536164	33	5.6	33	84	9	238	45	20	22	12	1.83
1535975--1536164	72	2.8	66	79	13	222	45	20	22	12	1.83
1535957--1536164	105	2.0	105	90	1	328	46	19	20	12	1.83
1536164--1536209	19	2.4	19	89	7	67	13	15	26	45	1.82
1536178--1536258	19	4.5	19	69	17	66	13	19	20	45	1.84
1536365--1536401	14	2.6	14	91	0	65	45	21	0	32	1.52
1538948--1539039	48	1.9	49	82	6	118	47	4	3	44	1.39
1539123--1539174	20	2.6	19	79	8	59	65	1	0	32	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12