genome.fa.s8387.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008387.1 Hibiscus syriacus cultivar Beakdansim tig00111151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2491990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1390 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
862335--862517	60	3.1	59	82	3	206	30	24	6	39	1.79
879123--879188	34	1.9	35	84	9	91	50	0	0	50	1.00
879123--879180	17	3.5	17	78	2	64	48	0	0	51	1.00
887972--888276	82	3.8	81	81	6	341	44	15	15	24	1.85
887982--888276	163	1.8	163	84	5	407	44	15	15	24	1.85
891825--891864	18	2.1	18	86	9	53	20	7	0	72	1.08
892458--892499	19	2.2	20	82	4	50	9	21	2	66	1.32
892546--892584	18	2.2	18	100	0	78	25	23	5	46	1.73
893262--893302	21	2.0	20	90	4	64	31	14	19	34	1.92
895323--895349	14	1.9	14	100	0	54	29	3	0	66	1.09
897434--897590	40	3.9	40	94	0	269	24	15	26	33	1.95
902027--902104	32	2.4	32	93	2	138	39	38	8	12	1.75
901796--902167	179	2.0	186	88	6	560	34	30	12	22	1.91
910926--910965	6	7.2	6	91	5	50	85	0	12	2	0.71
910927--910965	10	3.5	11	86	10	53	87	0	10	2	0.65
912081--912118	2	19.5	2	94	5	69	52	0	0	47	1.00
912251--912286	17	2.2	17	90	5	56	33	5	8	52	1.55
912559--912603	20	2.2	21	84	4	56	6	20	2	71	1.20
925301--925521	72	3.1	72	88	1	318	32	18	14	34	1.91
927013--927043	14	2.2	14	94	0	53	41	19	16	22	1.89
929740--929780	16	2.6	16	88	3	57	36	12	21	29	1.90
936909--936934	13	2.0	13	100	0	52	46	0	7	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941887--941943	10	5.4	11	74	20	50	80	8	8	1	0.97
941867--941938	20	3.4	21	78	17	69	76	9	13	0	1.02
941881--941933	10	4.9	10	77	13	52	81	7	11	0	0.88
941881--941958	9	8.8	9	72	12	54	79	7	11	1	0.99
941899--941946	12	3.9	11	82	15	51	83	8	6	2	0.88
941899--941948	25	2.0	26	84	11	68	82	8	8	2	0.93
942566--942608	22	2.0	22	95	0	77	34	27	13	23	1.93
943157--944089	106	8.9	106	91	1	1486	33	25	18	22	1.97
946000--946058	23	2.6	24	75	24	65	20	11	0	67	1.21
946632--946802	58	2.9	57	75	9	157	29	23	5	41	1.78
949409--949462	21	2.6	21	96	0	81	20	14	33	31	1.93
950144--950194	19	2.7	19	84	0	66	45	23	17	13	1.84
950184--950335	20	8.1	19	79	11	152	13	22	20	44	1.86
950184--950335	39	4.1	38	80	12	152	13	22	20	44	1.86
950245--950310	33	2.0	34	93	3	116	13	25	22	37	1.91
952336--952458	42	2.9	42	80	2	122	22	36	17	22	1.95
952392--952458	21	3.2	21	66	6	55	23	35	20	19	1.95
953819--953854	14	2.6	14	95	0	63	30	0	25	44	1.54
953961--954038	19	4.3	19	75	18	76	44	20	20	14	1.85
954033--954144	33	3.4	32	85	9	163	15	23	19	41	1.89
954053--954144	19	5.4	19	66	24	78	16	20	19	43	1.88
956437--956461	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956636--956689	24	2.2	24	90	0	81	38	20	16	24	1.92
957749--957806	20	2.9	20	94	0	98	37	22	22	17	1.93
957829--957902	19	4.5	16	83	16	66	13	20	18	47	1.82
957825--957892	19	3.8	19	87	12	101	13	22	17	47	1.82
958009--958045	14	2.6	14	86	0	56	48	21	0	29	1.50
959909--959975	19	3.5	19	83	4	89	37	23	23	14	1.93
959964--960021	14	3.9	14	77	16	62	50	25	15	8	1.73
959948--960026	32	2.4	33	93	2	133	48	24	17	10	1.78
960055--960144	14	5.9	14	76	19	90	11	17	23	47	1.79
960038--960160	32	3.8	33	96	2	223	12	18	21	47	1.81
960145--960188	20	2.2	20	88	4	63	18	25	20	36	1.95
960681--960725	18	2.5	18	88	0	72	13	15	44	26	1.83
962044--962081	20	1.9	20	88	0	58	50	21	15	13	1.78
962556--962651	20	4.6	22	73	12	78	22	16	22	37	1.94
962556--962653	41	2.4	41	85	0	142	22	16	22	38	1.92
962639--962694	21	2.7	21	97	0	103	14	26	19	39	1.90
962556--962671	41	2.8	41	81	2	108	21	18	22	37	1.95
962639--962711	21	3.5	21	88	1	85	16	26	19	38	1.92
962742--962782	21	2.0	21	85	0	55	34	31	17	17	1.93
963052--963111	11	6.0	11	69	21	51	41	0	0	58	0.98
963047--963118	19	3.7	19	98	1	135	43	0	1	55	1.08
963773--963804	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964138--964196	23	2.6	23	83	5	66	27	10	23	38	1.87
966790--967041	6	41.5	6	93	2	414	48	15	1	34	1.56
969109--969136	3	9.3	3	100	0	56	32	0	0	67	0.91
969109--969166	12	4.6	13	81	8	50	43	0	0	56	0.99
975001--975077	26	3.0	25	79	9	84	76	2	15	5	1.07
975046--975080	13	2.7	13	86	0	52	77	0	17	5	0.96
976253--976357	26	4.0	26	97	0	192	42	10	22	23	1.84
976776--976874	38	2.6	38	93	0	171	37	11	28	23	1.89
976801--976865	20	3.3	20	64	23	57	40	9	30	20	1.83
976996--977022	3	9.0	3	100	0	54	33	0	0	66	0.92
980937--980964	2	14.0	2	100	0	56	50	0	0	50	1.00
981421--981452	16	2.0	16	93	0	55	18	15	28	37	1.92
981740--981764	12	2.1	12	100	0	50	24	0	0	76	0.80
985371--985414	17	2.6	18	75	10	56	40	2	6	50	1.42
986134--986166	2	16.5	2	100	0	66	51	0	0	48	1.00
991505--991548	21	2.1	21	87	8	63	40	11	0	47	1.39
994508--994601	49	1.9	49	84	0	125	20	12	14	52	1.74
998594--998674	21	3.8	21	76	13	67	14	23	37	24	1.93
998615--998674	23	2.7	23	80	10	72	16	23	36	23	1.94
1008884--1008945	19	3.3	19	78	15	58	37	1	0	61	1.06
1017778--1017818	14	2.6	16	85	14	59	48	0	0	51	1.00
1021657--1021818	87	1.9	87	89	0	252	44	9	11	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025863--1027006	200	5.7	194	85	5	755	28	13	16	41	1.86
1026086--1027061	200	4.9	200	89	2	1426	27	12	16	43	1.85
1027298--1027344	24	2.0	24	86	0	67	48	17	2	31	1.58
1028702--1028735	6	5.7	6	89	0	50	20	32	2	44	1.67
1029889--1029930	15	2.8	15	85	0	57	28	0	50	21	1.49
1030277--1031366	199	5.5	199	92	0	1745	28	14	15	41	1.86
1031741--1031786	19	2.4	19	92	0	74	58	8	2	30	1.40
1033249--1033287	18	2.2	18	95	0	69	7	38	0	53	1.30
1035311--1035363	19	2.9	18	75	13	54	32	18	3	45	1.68
1035309--1035363	18	2.9	18	73	7	56	32	18	3	45	1.67
1035267--1035418	75	2.0	77	88	2	227	35	16	4	43	1.69
1035783--1036456	182	3.7	182	86	4	950	26	16	13	43	1.85
1043539--1043571	16	2.0	17	88	5	50	27	18	21	33	1.96
1056787--1056967	20	8.8	20	75	8	141	39	25	19	16	1.91
1056848--1056970	22	5.8	22	79	11	157	34	27	18	18	1.95
1056843--1056967	42	3.0	42	95	0	232	37	26	19	16	1.93
1056843--1056997	84	1.8	84	82	5	197	41	23	18	16	1.89
1058189--1058245	3	19.3	3	96	3	107	66	0	0	33	0.92
1058770--1058818	23	2.2	23	82	10	57	57	4	12	26	1.53
1059289--1059326	14	2.5	15	83	12	51	10	2	13	73	1.19
1068758--1068795	14	2.8	13	84	7	58	34	10	0	55	1.34
1068760--1068805	13	3.5	13	84	3	56	34	6	0	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068794--1068838	20	2.2	20	84	0	54	51	2	2	44	1.26
1069558--1069588	15	2.1	15	93	0	53	19	29	12	38	1.89
1069547--1069588	18	2.3	18	87	0	57	19	30	14	35	1.91
1073071--1073149	23	3.4	23	74	17	83	30	25	25	18	1.98
1074180--1074244	20	3.5	20	65	26	61	24	29	32	13	1.94
1076023--1076075	3	17.7	3	88	7	72	33	1	3	60	1.26
1076028--1076075	25	1.9	25	91	0	78	33	2	4	60	1.27
1078090--1078114	13	1.9	13	100	0	50	8	4	8	80	1.03
1080710--1081500	106	7.5	106	93	0	1280	32	24	18	23	1.97
1082416--1082465	3	16.7	3	83	8	57	36	2	4	58	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12