genome.fa.s8387.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008387.1 Hibiscus syriacus cultivar Beakdansim tig00111151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2491990

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  9  of  12  ( 1390 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1781532--1781606	24	3.2	24	75	16	84	21	22	24	32	1.98
1782162--1782204	21	2.0	22	86	4	61	25	20	30	23	1.99
1782237--1782285	25	2.0	25	87	0	71	16	16	30	36	1.91
1787563--1787632	30	2.3	30	92	0	113	35	4	22	37	1.74
1787866--1787951	23	3.7	23	76	17	97	19	24	26	29	1.99
1790201--1790269	30	2.2	30	82	15	86	37	5	14	42	1.70
1790210--1790269	30	2.0	30	90	6	95	36	6	13	43	1.70
1790362--1790465	44	2.4	44	100	0	208	24	27	22	25	1.99
1790514--1790554	21	2.0	21	90	0	64	31	17	26	24	1.97
1790838--1790907	34	2.1	32	86	5	95	32	15	31	20	1.94
1791817--1791877	11	5.2	12	78	9	56	70	3	3	22	1.17
1791812--1791875	19	3.2	19	77	8	56	70	3	3	23	1.16
1791824--1791877	16	3.2	17	76	7	56	70	3	1	24	1.13
1792311--1792360	12	3.9	13	78	21	61	24	34	8	34	1.84
1802270--1802324	3	18.0	3	89	10	85	67	0	1	30	1.01
1803871--1804056	60	3.1	59	80	6	223	33	23	5	37	1.78
1804200--1804363	60	2.7	59	75	8	161	41	4	21	32	1.72
1804821--1804902	39	2.1	40	93	2	139	47	10	12	29	1.75
1805985--1806030	5	9.2	5	86	13	60	78	0	4	17	0.91
1805991--1806031	13	2.9	13	89	10	55	80	0	2	17	0.82
1808095--1808579	133	3.7	130	80	4	483	24	16	32	25	1.96
1808960--1809026	34	2.0	34	91	2	109	28	23	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1810032--1810120	25	3.7	24	72	14	76	1	15	6	76	1.05
1814256--1814280	2	12.5	2	100	0	50	48	0	0	52	1.00
1815230--1815273	3	15.0	3	88	4	63	70	2	0	27	0.99
1817591--1817648	23	2.8	19	72	18	53	51	1	0	46	1.11
1818513--1819205	216	3.3	216	88	5	1043	50	7	11	30	1.65
1819300--1819484	2	92.0	2	77	13	175	47	2	2	47	1.28
1819457--1819504	20	2.5	20	89	3	71	45	10	4	39	1.58
1819516--1819592	27	2.9	24	77	14	64	46	3	2	46	1.34
1819759--1819802	9	5.4	9	75	25	53	54	9	0	36	1.32
1819750--1819816	22	3.0	22	88	4	98	49	10	2	37	1.53
1819766--1819793	13	2.2	13	100	0	56	53	7	0	39	1.28
1819892--1820006	38	2.9	40	82	15	141	40	9	8	40	1.69
1819895--1820004	18	5.7	18	74	19	96	40	10	9	40	1.70
1820020--1820068	2	23.0	2	80	12	53	46	4	2	46	1.33
1820013--1820088	23	3.2	24	75	14	68	44	5	3	46	1.44
1820013--1820088	25	3.2	25	72	24	65	44	5	3	46	1.44
1820092--1820148	28	2.0	28	86	0	78	50	24	0	24	1.49
1820164--1820285	18	7.1	18	68	17	89	44	6	7	41	1.58
1820140--1820286	31	4.4	32	77	16	154	43	6	6	42	1.57
1820359--1820471	60	1.9	60	83	0	145	51	4	10	33	1.57
1824953--1825051	24	4.3	24	76	12	100	41	19	14	25	1.88
1825225--1825274	21	2.4	21	100	0	100	46	4	0	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1825739--1825919	29	6.4	28	80	6	107	49	13	3	33	1.60
1825756--1825883	28	4.6	27	79	7	114	50	10	1	37	1.46
1825861--1825924	29	2.2	29	94	2	112	40	25	7	26	1.82
1829496--1829621	47	2.8	46	83	5	150	30	23	7	38	1.81
1833662--1833758	6	15.3	6	71	17	54	6	17	2	74	1.12
1833659--1833779	15	7.1	15	70	19	53	5	17	2	74	1.13
1833669--1833758	27	3.3	26	73	23	71	6	16	2	74	1.13
1833675--1833717	21	2.0	22	91	8	72	4	18	4	72	1.20
1833680--1833726	21	2.3	20	82	13	60	6	19	4	70	1.26
1833719--1833752	15	2.3	15	95	5	61	11	11	0	76	1.02
1833748--1833781	18	1.9	17	94	5	59	5	14	2	76	1.09
1836150--1836275	47	2.8	46	83	5	150	30	23	7	38	1.81
1841848--1841952	24	4.4	23	83	3	93	42	14	15	27	1.85
1841876--1841953	24	3.2	24	89	3	95	46	12	12	28	1.79
1842658--1842743	29	2.9	29	78	1	91	50	12	1	36	1.48
1842732--1842777	23	2.0	23	86	0	65	43	4	4	47	1.42
1842784--1842840	29	1.9	29	96	3	105	42	21	7	29	1.79
1845065--1845108	21	2.0	22	86	4	63	50	0	2	47	1.13
1845065--1845130	21	3.0	20	82	10	60	45	3	1	50	1.26
1847015--1847658	215	3.0	215	91	2	1041	34	13	13	39	1.83
1847504--1847533	12	2.5	12	94	0	51	23	0	3	73	0.98
1847965--1848003	15	2.6	15	87	0	60	20	12	5	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1848461--1848630	41	4.2	39	75	11	153	33	20	16	29	1.95
1848661--1848747	43	2.0	43	82	8	106	28	17	16	37	1.91
1851875--1852123	43	6.1	41	71	16	187	26	23	20	30	1.99
1852913--1853155	43	5.7	43	91	0	362	25	22	22	28	1.99
1852888--1853182	86	3.4	85	83	4	351	28	21	21	28	1.99
1852909--1853181	129	2.1	129	85	4	374	26	21	22	30	1.99
1853351--1853409	21	2.8	21	84	0	64	55	20	3	20	1.57
1854754--1854821	16	4.4	16	75	14	63	39	30	0	29	1.57
1857678--1858019	41	8.3	41	77	11	326	35	17	19	27	1.95
1857654--1858019	82	4.4	83	81	7	440	34	17	19	28	1.95
1857654--1858019	165	2.2	164	84	3	459	34	17	19	28	1.95
1864175--1864204	16	1.9	16	93	6	53	46	20	0	33	1.51
1864961--1864995	2	17.5	2	100	0	70	48	0	0	51	1.00
1866003--1866037	2	17.5	2	100	0	70	48	0	0	51	1.00
1866640--1866699	27	2.2	26	80	8	66	48	0	5	46	1.24
1872153--1872228	37	2.1	37	84	0	98	26	18	25	30	1.98
1872552--1872597	20	2.4	20	82	17	62	21	23	19	34	1.96
1889805--1889887	29	2.8	29	90	1	130	42	9	14	33	1.78
1894583--1894655	29	2.5	29	88	0	110	42	12	13	31	1.81
1903004--1903043	21	1.9	21	94	0	71	30	27	17	25	1.97
1903000--1903052	21	2.5	21	81	0	70	28	28	20	22	1.99
1903086--1903338	40	6.2	40	95	2	452	20	19	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1903086--1903338	82	3.1	80	94	3	452	20	19	24	35	1.96
1903086--1903338	122	2.1	122	98	0	488	20	19	24	35	1.96
1903311--1903361	21	2.4	21	93	0	84	23	15	13	47	1.82
1903613--1903729	42	2.8	42	97	2	220	35	27	18	17	1.94
1903618--1903754	42	3.3	40	90	4	202	33	27	20	18	1.96
1903618--1903754	21	6.6	21	79	9	156	33	27	20	18	1.96
1904325--1904391	30	2.2	31	80	17	79	74	0	4	20	0.99
1905522--1905558	11	3.4	11	92	7	58	81	2	5	10	0.96
1905554--1905597	23	1.9	22	82	17	54	56	4	2	36	1.32
1905594--1905754	30	5.2	32	71	19	99	44	4	3	46	1.42
1905633--1905712	29	2.7	29	81	9	83	47	5	6	41	1.50
1905707--1905879	37	4.8	36	79	16	148	42	6	4	46	1.48
1905679--1905846	69	2.4	70	83	9	211	44	4	4	46	1.43
1906659--1906697	20	2.0	20	89	0	60	17	41	35	5	1.72
1908325--1908358	10	3.4	10	87	0	50	20	5	0	73	1.04
1918567--1919024	105	4.3	106	95	1	805	33	24	18	22	1.97
1918567--1919024	211	2.2	211	94	1	803	33	24	18	22	1.97
1920387--1920425	20	2.0	20	89	0	60	17	41	35	5	1.72
1920982--1921042	32	1.9	32	83	6	79	26	9	1	62	1.36
1922386--1922427	21	2.0	21	100	0	84	47	14	23	14	1.80
1922457--1922512	29	1.9	29	96	0	103	12	37	30	19	1.89
1922582--1922635	14	3.9	14	97	0	99	7	27	40	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1924159--1924324	86	1.9	86	92	3	280	46	10	12	31	1.74
1924564--1924613	25	2.0	26	88	4	75	52	6	4	38	1.45
1924944--1924989	17	2.7	18	83	10	60	19	0	21	58	1.39
1926844--1927251	126	3.4	124	90	6	614	33	4	9	51	1.56
1927212--1927269	18	3.2	18	67	13	55	39	1	13	44	1.54
1927212--1927290	37	2.1	39	90	4	126	40	3	10	45	1.56
1927083--1927504	154	2.8	151	92	6	741	34	4	10	50	1.57
1927358--1927434	36	2.1	37	85	9	104	40	3	10	45	1.57
1927513--1927539	2	13.5	2	100	0	54	51	0	0	48	1.00
1935669--1935727	30	2.0	30	96	0	109	15	18	33	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12