genome.fa.s8413.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008413.1 Hibiscus syriacus cultivar Beakdansim tig00111191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2772818

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2762714--2762997	153	1.8	153	90	7	459	46	17	21	14	1.84
2762683--2762997	33	9.2	35	82	13	287	46	18	21	13	1.84
2762713--2763019	51	6.0	52	83	11	400	45	17	21	14	1.84
2763026--2763127	19	5.6	19	85	12	151	14	23	17	44	1.86
2763233--2763269	14	2.6	14	91	0	65	45	21	0	32	1.52
2765215--2765271	14	3.7	14	77	20	60	45	22	21	10	1.82
2765196--2765288	33	2.8	33	95	0	168	47	21	20	10	1.80
2765159--2765293	19	7.6	19	76	16	128	45	23	19	11	1.82
2765289--2765400	19	6.5	19	70	21	102	7	16	28	47	1.73
2765289--2765379	33	2.8	33	90	5	132	7	17	28	46	1.76
2765450--2765910	91	5.0	92	97	2	867	45	19	13	22	1.84
2767578--2767669	14	5.7	14	70	26	58	42	23	25	8	1.82
2767571--2767686	33	3.5	33	90	3	180	44	21	24	9	1.81
2767627--2767691	19	3.7	19	70	19	68	46	21	21	10	1.82
2767703--2767757	14	3.6	14	73	21	56	9	25	23	41	1.83
2767687--2767757	33	2.2	33	94	0	124	8	22	25	43	1.81
2767698--2767779	33	2.5	33	89	2	119	9	25	21	42	1.84
2767710--2767798	20	4.8	20	72	19	75	12	24	19	43	1.85
2767877--2767946	32	2.2	31	89	2	104	45	20	21	12	1.84
2768119--2768173	22	2.5	22	81	0	74	20	16	40	23	1.91
2768318--2768510	20	9.6	20	82	5	219	19	19	25	35	1.95
2768318--2768510	60	3.2	60	83	0	251	19	19	25	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2768566--2768617	20	2.6	20	96	0	95	21	13	26	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10

The End!