genome.fa.s8413.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008413.1 Hibiscus syriacus cultivar Beakdansim tig00111191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2772818

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
783644--783971	131	2.5	132	88	2	482	38	17	10	33	1.84
792527--792636	47	2.4	45	85	10	152	35	23	4	36	1.76
795692--796629	458	2.0	464	92	1	1582	43	10	21	25	1.84
798447--798561	7	15.4	7	69	18	56	5	17	0	76	1.02
798502--798562	13	4.7	14	74	25	55	6	18	0	75	1.01
798461--798559	19	5.4	19	76	17	93	5	19	0	75	0.98
798458--798562	39	2.8	40	80	13	116	4	20	0	75	0.98
798471--798524	23	2.3	24	78	6	58	3	22	0	74	0.98
798506--798553	25	1.9	25	87	8	71	8	16	0	75	1.04
803118--803177	18	3.5	17	72	22	63	53	8	20	18	1.70
803112--803181	33	2.1	33	94	0	122	50	10	21	18	1.76
804095--804181	40	2.2	40	100	0	174	25	27	22	24	2.00
806816--806846	11	2.7	12	95	5	55	29	0	41	29	1.56
810470--810522	24	2.2	24	83	9	65	45	0	5	49	1.26
810667--810716	23	2.3	21	83	16	59	52	2	2	44	1.24
810694--810773	21	3.5	23	72	16	67	52	0	0	47	1.00
810689--810765	12	7.1	11	69	17	54	51	0	0	48	1.00
810689--810773	33	2.6	33	76	12	86	51	0	0	48	1.00
810626--810757	53	2.4	54	77	16	139	51	1	0	46	1.15
810787--810837	19	2.7	19	75	9	59	56	0	1	41	1.10
814219--814300	23	3.5	23	73	5	67	41	17	14	26	1.88
815302--815386	43	2.0	43	90	0	134	43	11	11	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
815726--815763	2	19.0	2	100	0	76	50	0	0	50	1.00
816764--816805	23	1.9	21	90	9	66	16	0	2	80	0.81
816664--816940	146	1.9	147	93	2	477	27	6	10	56	1.56
816664--816880	70	2.9	73	66	18	169	26	6	10	56	1.58
817768--817843	35	2.1	37	85	7	102	48	1	3	46	1.29
823926--823984	30	2.0	29	83	6	75	16	11	10	61	1.57
824474--824569	22	4.6	21	72	19	67	21	18	12	46	1.82
825928--825988	9	7.1	8	75	18	52	78	3	16	1	0.96
825906--825953	18	2.7	18	77	6	53	75	0	16	8	1.04
825928--825973	23	2.0	24	86	4	67	80	2	17	0	0.81
826159--826185	9	3.0	9	100	0	54	66	0	22	11	1.22
826730--826826	28	3.5	28	91	0	158	38	32	3	25	1.72
829930--830104	36	4.9	36	89	0	260	26	14	14	44	1.84
834493--834603	3	38.7	3	70	15	65	62	0	2	34	1.16
834939--835357	113	3.6	113	84	6	443	27	18	14	39	1.90
835059--835393	115	3.0	112	87	3	429	27	19	15	37	1.91
836546--836583	18	2.1	18	95	0	67	55	5	7	31	1.51
836955--837017	5	12.4	5	75	18	51	7	14	0	77	0.97
836951--837014	18	3.7	18	80	17	73	9	14	0	76	1.01
836954--837004	23	2.1	25	89	7	79	7	13	0	78	0.96
836945--837011	13	5.6	12	77	15	59	11	13	0	74	1.07
840538--840562	9	2.8	9	100	0	50	64	0	12	24	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
848187--848239	2	26.5	2	88	0	70	47	3	1	47	1.31
849881--849994	3	40.7	3	72	18	77	63	0	3	33	1.12
849905--849996	8	11.2	8	69	19	57	66	0	3	30	1.08
850611--850651	21	2.0	21	95	0	73	24	24	24	26	2.00
851000--851222	45	5.0	45	94	0	385	31	22	6	39	1.79
851103--851176	25	3.2	25	62	31	63	29	21	8	40	1.82
851897--851989	45	2.1	45	100	0	186	39	20	4	35	1.72
855251--855289	21	1.9	20	85	15	53	41	23	10	25	1.86
857873--858130	45	5.8	45	94	0	464	31	23	6	38	1.79
859325--859418	30	3.1	30	78	3	98	32	11	7	47	1.68
865023--865196	36	4.9	36	89	0	260	27	14	16	41	1.87
865964--866009	19	2.4	19	100	0	92	50	0	8	41	1.33
871473--871506	11	3.2	11	83	8	52	29	17	32	20	1.96
871467--871506	21	1.9	21	100	0	80	35	17	30	17	1.93
871467--871500	10	3.3	10	84	8	50	38	17	26	17	1.92
874457--874630	36	4.9	36	92	1	296	26	16	14	43	1.86
874457--874630	71	2.4	72	92	1	296	26	16	14	43	1.86
878458--878525	29	2.3	29	92	0	118	20	7	17	54	1.67
879274--879333	24	2.7	21	75	12	66	31	16	15	36	1.90
880373--880414	22	2.0	21	85	4	57	69	2	0	28	1.01
884228--884281	21	2.6	21	84	0	72	38	14	25	20	1.91
887069--887117	22	2.2	22	92	0	80	28	28	6	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888204--888257	27	2.0	27	92	0	90	40	14	25	18	1.89
888963--889037	30	2.5	31	88	2	116	29	8	13	49	1.70
889851--889972	25	4.8	25	92	4	183	53	4	7	34	1.50
893752--894095	46	7.5	46	91	0	508	41	13	21	24	1.88
899360--899795	46	9.5	46	87	3	592	41	13	21	23	1.88
899360--899795	92	4.7	92	91	0	658	41	13	21	23	1.88
900520--900624	24	4.4	24	79	2	122	23	20	23	32	1.98
915726--915894	90	1.9	89	88	3	259	37	8	22	31	1.84
915726--915894	44	3.8	45	87	3	252	37	8	22	31	1.84
916177--916203	13	2.1	13	100	0	54	29	22	0	48	1.51
916447--916513	23	2.9	23	88	2	89	23	17	22	35	1.95
916460--916555	24	4.0	24	86	1	113	23	21	21	32	1.98
922136--922456	84	3.8	85	74	7	260	36	8	18	37	1.81
922157--922455	166	1.8	166	85	1	429	36	8	18	36	1.81
933229--933658	194	2.2	191	86	5	571	40	8	16	34	1.80
933471--933594	60	2.0	60	80	4	133	41	8	16	33	1.77
933417--933647	125	1.8	126	84	8	317	37	9	16	35	1.82
933615--933696	35	2.3	37	85	4	114	39	8	18	34	1.81
937028--937073	19	2.4	18	82	10	56	52	19	13	15	1.75
936983--937074	26	3.5	26	69	16	73	48	18	18	14	1.80
937036--937074	19	2.0	20	90	5	62	53	20	12	12	1.71
941350--941407	19	3.1	18	78	9	62	17	27	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941353--941408	20	2.9	19	78	2	67	17	25	30	26	1.97
948821--948859	19	2.1	19	85	0	51	61	7	5	25	1.44
949309--949365	21	2.6	22	81	13	57	75	1	21	1	0.98
955293--955934	321	2.0	320	97	2	1211	29	19	21	30	1.97
963781--963857	4	20.8	4	75	17	53	79	0	16	3	0.88
963785--963858	7	10.1	7	73	17	62	79	0	16	4	0.87
963770--963824	26	2.2	25	87	9	76	78	0	14	7	0.96
963795--963848	15	3.5	15	80	7	56	79	0	14	5	0.90
963780--963858	30	2.6	30	82	13	99	79	0	16	3	0.87
963780--963846	25	2.6	25	79	9	73	80	0	14	4	0.86
965938--966140	57	3.6	56	77	12	238	30	10	16	41	1.83
965880--966197	109	2.8	109	86	6	406	31	10	17	41	1.82
966389--966556	39	4.3	39	87	3	241	33	16	16	34	1.91
977994--978051	16	3.4	16	78	17	62	81	0	17	1	0.78
978006--978052	5	9.2	5	77	13	51	82	0	14	2	0.75
978001--978054	16	3.0	18	79	17	67	83	0	14	1	0.73
978008--978054	14	3.1	15	81	9	60	85	0	12	2	0.70
978989--979816	136	6.1	136	85	2	939	36	16	20	26	1.93
980011--980061	18	2.8	18	81	3	66	54	39	1	3	1.30
984476--984508	16	2.1	16	100	0	66	45	18	0	36	1.49
986566--986604	20	2.0	20	84	0	51	23	7	23	46	1.78
986782--986840	20	2.8	21	84	10	75	18	25	35	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986759--986842	21	3.9	22	77	13	77	17	25	34	22	1.96
999226--999298	2	36.5	2	100	0	146	50	0	0	49	1.00
999365--999477	36	3.1	37	77	3	120	33	15	20	30	1.93
1001016--1001128	46	2.5	45	85	7	149	32	21	7	38	1.80
1003282--1003366	11	7.2	11	72	22	66	31	36	3	28	1.74
1003279--1003380	36	2.9	36	94	1	170	32	36	4	26	1.78
1003280--1003396	36	3.4	34	85	11	130	30	36	3	29	1.74
1003280--1003419	36	4.1	33	84	9	88	30	36	2	30	1.72
1003753--1003801	12	4.1	11	80	17	53	75	6	18	0	1.00
1007785--1007869	11	7.2	11	72	22	66	31	36	3	28	1.74

Tables:   1   2   3   4   5   6   7   8   9   10