genome.fa.s8413.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008413.1 Hibiscus syriacus cultivar Beakdansim tig00111191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2772818

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382508--382560	23	2.3	23	90	3	79	9	16	11	62	1.54
383288--383459	90	1.9	91	90	1	274	27	23	26	21	1.99
388121--388178	26	2.2	26	78	9	64	70	3	5	20	1.21
389383--389431	20	2.5	20	93	6	84	32	10	14	42	1.79
389423--389474	17	3.1	17	83	5	61	38	15	7	38	1.76
390977--391019	19	2.3	18	92	8	68	86	2	0	11	0.67
390977--391019	9	4.6	9	91	8	68	86	2	0	11	0.67
392822--392875	23	2.3	24	83	3	74	64	11	14	9	1.48
397586--397630	21	2.1	21	88	8	65	48	2	31	17	1.59
399234--399286	17	3.1	17	86	0	70	37	13	7	41	1.72
403655--403686	2	16.0	2	100	0	64	50	0	0	50	1.00
405462--405643	90	2.0	91	86	1	258	28	23	26	21	1.99
408942--408986	24	1.9	23	82	13	56	15	15	8	60	1.59
411601--411625	13	1.9	13	100	0	50	20	24	16	40	1.91
413468--413528	27	2.3	27	97	0	113	29	13	21	36	1.91
413853--413957	48	2.2	48	81	6	115	21	12	17	48	1.80
413853--413959	24	4.5	24	75	11	85	22	12	16	48	1.79
414122--414167	19	2.4	20	89	7	69	41	0	8	50	1.33
416096--416127	13	2.5	13	94	0	55	18	25	18	37	1.94
417981--418041	27	2.3	27	97	0	113	27	16	21	34	1.95
418377--418472	24	4.0	24	82	1	77	23	7	18	50	1.72
418380--418446	24	2.8	24	84	2	91	23	8	19	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425052--425092	11	3.8	11	78	15	50	85	0	14	0	0.60
425052--425092	20	2.0	21	90	9	68	85	0	14	0	0.60
428173--428226	23	2.3	24	80	3	65	61	12	14	11	1.58
460600--460647	24	2.0	24	87	0	69	12	14	18	54	1.71
466720--466791	32	2.2	32	95	0	126	18	26	22	33	1.96
467371--467416	23	2.0	23	88	12	69	67	4	13	15	1.38
470770--470817	25	2.0	24	83	4	60	12	12	18	56	1.67
470954--471643	367	1.9	370	91	3	1140	35	11	26	25	1.90
486326--486380	16	3.3	16	82	5	65	76	5	16	1	1.06
488208--488241	17	1.9	18	94	5	61	64	17	5	11	1.45
496691--496730	19	2.0	20	85	4	55	20	10	0	70	1.16
508763--508793	16	1.9	16	100	0	62	25	12	32	29	1.93
511626--511685	30	2.0	31	83	3	77	26	8	10	55	1.61
512573--512623	20	2.6	20	90	3	77	35	15	5	43	1.71
513036--513075	19	2.0	20	85	4	55	20	12	2	65	1.38
514291--514336	19	2.3	20	85	3	58	34	15	6	43	1.72
517694--517733	20	1.9	20	85	10	53	32	7	32	27	1.85
523108--523167	30	2.0	31	83	3	77	26	8	10	55	1.61
524077--524122	20	2.3	20	85	3	58	39	15	6	39	1.73
524540--524579	19	2.0	20	90	4	64	20	15	0	65	1.28
527113--527161	24	2.1	23	88	3	71	69	6	16	8	1.33
528374--528416	23	1.9	21	81	13	50	32	18	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530120--530300	91	2.0	91	88	0	272	20	25	22	30	1.98
545281--545454	91	1.9	91	87	0	258	31	21	25	21	1.98
554550--554575	13	2.0	13	100	0	52	30	30	0	38	1.58
559794--559833	19	2.0	20	86	13	57	22	10	0	67	1.20
563361--563421	23	2.6	23	84	2	77	63	11	16	8	1.49
567815--567840	13	2.0	13	100	0	52	30	30	0	38	1.58
568963--569014	21	2.6	21	84	6	72	30	15	7	46	1.74
570068--570117	19	2.6	19	93	0	82	44	6	16	34	1.72
573478--573533	13	4.7	11	74	21	51	1	19	1	76	0.96
573478--573533	18	3.1	18	76	19	62	1	19	1	76	0.96
574263--574313	19	2.6	20	90	3	77	43	5	15	35	1.71
577384--579849	949	2.6	952	99	0	4884	34	16	15	33	1.90
580928--580960	16	2.1	16	94	0	57	36	15	6	42	1.71
581930--581987	23	2.6	22	78	5	62	10	15	8	65	1.46
584758--584793	19	1.9	20	88	11	58	22	11	0	66	1.22
584754--584796	19	2.4	17	82	17	52	23	9	0	67	1.19
585062--585147	19	4.6	18	76	15	68	74	2	18	4	1.10
586113--586156	22	2.0	22	82	8	54	56	11	18	13	1.66
587433--587478	24	2.0	23	83	8	58	32	4	10	52	1.56
590003--590045	23	1.9	21	81	13	50	32	18	13	34	1.90
596998--597038	22	1.9	21	85	5	55	36	34	2	26	1.70
599616--599653	18	2.1	18	90	0	58	47	13	5	34	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599717--599754	17	2.2	18	85	4	51	42	10	13	34	1.78
602043--602092	19	2.7	20	82	14	54	2	18	2	78	0.95
602345--602384	21	1.9	21	85	10	55	62	0	17	20	1.33
603639--603821	91	2.0	91	89	0	276	20	28	21	29	1.98
609290--609472	91	2.0	91	90	0	285	23	26	21	28	1.99
611041--611112	37	2.0	36	82	12	87	40	6	8	44	1.61
611376--611415	19	2.0	20	86	13	57	67	0	10	22	1.20
616143--616185	21	2.0	21	100	0	86	34	18	23	23	1.96
617457--617508	19	2.6	21	90	6	81	46	7	11	34	1.69
620468--620519	21	2.6	21	90	6	81	34	13	5	46	1.67
620898--620928	9	3.4	9	100	0	62	29	35	0	35	1.58
620950--620989	19	2.0	20	86	13	57	22	10	0	67	1.20
628870--628921	21	2.6	20	82	8	70	38	11	5	44	1.65
629130--629165	15	2.3	15	95	4	63	33	22	8	36	1.84
632697--632742	20	2.4	19	89	10	67	34	10	6	47	1.64
641687--641713	11	2.5	11	100	0	54	29	11	22	37	1.89
643944--643995	21	2.6	19	87	6	68	34	13	3	48	1.61
644412--644449	19	1.9	19	85	15	51	23	10	0	65	1.23
644404--644457	28	1.9	28	81	7	65	24	9	0	66	1.20
644714--644753	19	2.1	19	86	9	55	72	5	15	7	1.24
647851--647899	20	2.6	19	84	15	66	32	14	8	44	1.74
651822--651872	19	2.6	20	90	3	77	43	5	15	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654915--654956	13	3.4	12	80	12	50	7	14	4	73	1.21
654931--654981	18	2.9	18	85	11	70	1	15	5	76	1.07
655641--655692	19	2.6	21	90	6	81	46	7	11	34	1.69
658143--658198	20	2.8	20	100	0	112	39	14	5	41	1.68
664735--664786	24	2.2	25	79	10	63	59	15	17	7	1.58
664780--664812	14	2.4	14	90	10	50	78	0	21	0	0.75
668704--668755	24	2.2	25	79	10	63	59	15	17	7	1.58
671971--672026	20	2.8	20	100	0	112	39	14	5	41	1.68
674426--674480	24	2.3	24	96	0	101	34	25	18	21	1.96
676779--676819	21	2.0	21	85	9	57	78	0	17	4	0.93
682675--682720	11	4.0	12	77	8	51	71	4	10	13	1.27
682675--682717	23	1.9	22	90	4	68	69	4	11	13	1.33
685004--685033	13	2.4	13	94	5	53	43	0	30	26	1.55
690022--690064	22	2.0	22	85	0	59	18	23	25	32	1.97
692239--692281	23	1.9	21	81	13	50	32	18	11	37	1.87
699358--699404	20	2.4	19	73	13	51	59	8	8	23	1.54
703933--703987	24	2.3	23	78	12	58	30	9	23	36	1.86
723416--723474	31	1.9	30	82	3	73	32	13	11	42	1.81
724650--724702	24	2.3	23	83	9	63	11	15	18	54	1.70
732497--732551	24	2.4	22	77	14	65	65	12	12	9	1.47
747170--747225	25	2.4	21	80	16	58	7	14	3	75	1.16
747188--747244	20	2.8	21	81	7	64	3	14	3	78	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749636--749665	13	2.4	13	94	5	53	26	30	0	43	1.55
752178--752259	23	3.7	22	87	4	103	23	31	26	18	1.97
754123--754188	16	4.1	16	75	14	64	22	1	24	51	1.57
757155--757204	27	1.9	26	88	8	75	6	16	16	62	1.52
757158--757213	27	2.1	28	83	6	71	8	17	14	58	1.61
758931--758981	24	2.1	24	88	0	75	11	13	17	56	1.66
765708--765757	24	2.1	23	85	3	64	12	12	18	58	1.64
774321--774378	24	2.3	25	80	11	66	48	8	0	43	1.34
774509--774555	19	2.5	19	86	6	60	34	12	2	51	1.52
777156--777223	33	2.1	33	88	5	102	50	19	17	13	1.78

Tables:   1   2   3   4   5   6   7   8   9   10