genome.fa.s8413.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008413.1 Hibiscus syriacus cultivar Beakdansim tig00111191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2772818

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  6  of  10  ( 1103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1669597--1669997	183	2.2	181	80	8	431	43	7	4	43	1.55
1669597--1669979	91	4.2	90	75	11	336	44	7	4	43	1.53
1671497--1671692	97	2.0	97	100	0	392	29	18	14	37	1.90
1673628--1673676	22	2.4	19	78	18	62	40	6	0	53	1.26
1673633--1673682	22	2.3	22	96	0	91	44	6	0	50	1.26
1676826--1676872	2	24.0	2	95	4	87	48	0	0	51	1.00
1678204--1679039	39	21.4	39	93	0	1323	35	17	17	28	1.93
1679053--1679273	76	2.9	76	80	7	193	40	14	14	30	1.86
1679078--1679357	151	1.9	151	80	10	331	40	15	14	30	1.87
1679028--1679357	75	4.4	75	81	7	312	39	14	14	31	1.86
1683527--1683579	27	1.9	28	92	3	90	60	11	15	13	1.59
1685036--1685076	2	21.0	2	95	5	75	48	0	0	51	1.00
1687585--1687805	91	2.4	90	81	12	231	42	6	5	44	1.55
1687647--1687851	93	2.2	92	79	11	222	42	7	7	42	1.60
1690416--1690455	21	1.9	21	100	0	80	35	15	15	35	1.88
1693182--1693216	2	17.5	2	100	0	70	51	0	0	48	1.00
1694573--1694612	13	3.2	13	92	3	64	55	10	0	35	1.34
1699001--1699041	2	20.5	2	100	0	82	48	0	0	51	1.00
1700143--1700185	20	2.3	19	80	11	52	20	27	9	41	1.83
1700148--1700185	20	1.9	20	88	0	58	21	26	10	42	1.85
1701574--1701620	24	2.0	23	87	4	67	68	0	2	29	1.02
1702116--1702149	15	2.3	15	90	5	52	8	11	11	67	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1710205--1710282	38	2.1	37	85	4	104	44	10	17	26	1.81
1710301--1710578	37	7.8	37	70	9	159	37	8	17	35	1.82
1710474--1710577	34	3.0	35	80	12	108	37	10	18	33	1.85
1713452--1713483	16	2.0	16	93	0	55	59	6	15	18	1.57
1716689--1716873	96	1.9	96	88	2	282	37	12	23	25	1.91
1717233--1717535	45	6.7	45	90	0	462	43	12	22	22	1.86
1717947--1717990	21	2.1	21	83	8	54	31	22	18	27	1.97
1720526--1720566	22	1.9	21	90	5	64	19	2	36	41	1.65
1725650--1725708	21	2.8	19	79	18	64	5	13	0	81	0.85
1725662--1725708	14	3.3	14	77	14	51	4	12	0	82	0.80
1725650--1725713	24	2.5	26	78	12	71	6	14	1	78	1.02
1726009--1726049	22	1.9	21	85	5	55	19	4	36	39	1.73
1730240--1730537	45	6.6	45	91	0	461	43	13	21	21	1.87
1740941--1740969	9	3.2	9	100	0	58	68	31	0	0	0.89
1741771--1741824	22	2.6	20	75	16	56	25	7	5	61	1.45
1741791--1741848	27	2.0	28	83	9	73	22	8	5	63	1.42
1743842--1743904	34	1.9	32	84	12	83	15	14	15	53	1.72
1746677--1747114	76	5.8	76	86	2	512	32	16	10	41	1.82
1747092--1747627	39	13.6	39	87	2	734	31	15	16	35	1.91
1747822--1747863	22	2.0	21	90	4	66	23	2	33	40	1.68
1752357--1752397	22	1.9	21	90	5	64	19	2	36	41	1.65
1753730--1753839	42	2.6	42	78	4	125	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1756856--1756897	21	2.0	21	85	0	57	16	7	7	69	1.34
1760160--1760272	35	3.2	34	88	5	163	42	23	0	33	1.60
1761346--1761456	35	3.2	34	87	5	152	35	0	21	42	1.59
1762302--1762878	297	1.9	299	89	2	903	44	13	13	27	1.82
1765150--1765196	24	1.9	25	86	4	69	59	4	4	31	1.36
1767010--1767388	99	3.8	99	91	1	580	20	20	26	32	1.97
1768407--1768464	6	9.7	6	80	15	59	0	17	1	81	0.78
1768455--1768572	59	2.0	59	80	3	130	15	20	13	50	1.77
1768455--1768572	60	2.0	59	81	1	137	15	20	13	50	1.77
1779476--1779522	24	1.9	25	86	4	69	59	4	4	31	1.36
1785382--1785473	30	3.1	30	95	0	157	41	20	16	21	1.90
1786024--1786317	96	3.3	92	79	12	283	37	8	15	38	1.77
1786184--1786341	26	6.0	26	77	9	158	35	10	16	37	1.82
1786318--1786565	133	1.9	133	90	5	403	39	7	13	38	1.74
1786317--1786555	69	3.6	67	81	12	296	40	7	14	37	1.75
1793611--1793643	3	11.0	3	100	0	66	66	0	0	33	0.92
1794175--1794355	65	2.8	65	91	0	281	40	13	21	24	1.89
1794411--1794563	36	4.1	37	78	6	139	37	13	19	29	1.89
1794411--1794525	37	3.1	37	85	5	135	41	11	18	28	1.85
1794424--1794542	37	3.2	37	81	9	109	37	11	19	31	1.88
1798155--1798186	12	2.7	12	95	0	55	43	12	25	18	1.85
1799352--1799398	24	1.9	24	86	4	67	48	17	2	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1802498--1802579	31	2.6	32	82	5	114	32	20	21	24	1.98
1805502--1805530	11	2.6	11	100	0	58	24	20	0	55	1.44
1807249--1807288	21	1.9	21	89	0	62	55	7	7	30	1.56
1813731--1813877	64	2.3	65	84	5	183	31	22	16	29	1.96
1816244--1816334	31	2.9	31	79	6	103	34	20	18	26	1.96
1818799--1818868	36	2.0	36	83	5	90	14	12	47	25	1.80
1819631--1819693	26	2.4	26	100	0	126	38	31	14	15	1.88
1820616--1820668	19	2.6	21	76	14	65	28	24	15	32	1.95
1821607--1821641	3	11.7	3	100	0	70	68	0	0	31	0.90
1826225--1826260	11	3.3	11	92	0	54	25	0	0	75	0.81
1827894--1828090	94	2.1	95	82	0	234	37	12	22	27	1.90
1828438--1828698	107	2.4	108	90	1	409	31	20	18	29	1.96
1828438--1828698	54	4.9	54	92	1	402	31	20	18	29	1.96
1836754--1836837	12	7.0	12	73	8	64	34	2	9	53	1.46
1843531--1843580	24	2.1	24	84	0	64	30	26	18	26	1.98
1845429--1845467	14	2.8	14	96	0	69	46	5	25	23	1.73
1852431--1852497	31	2.2	31	83	5	82	35	7	23	32	1.83
1853037--1853085	24	2.0	24	100	0	98	32	12	12	42	1.79
1853609--1853794	46	4.1	46	91	0	302	38	6	22	32	1.81
1870013--1870067	24	2.3	24	87	9	85	40	7	29	23	1.81
1871801--1871859	24	2.5	24	88	0	91	30	35	10	23	1.88
1872145--1872196	20	2.7	20	82	5	72	36	11	7	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1885288--1885327	13	3.1	13	92	0	62	37	20	20	22	1.94
1897630--1897682	18	2.9	18	80	2	61	79	5	9	5	1.06
1897630--1897683	19	2.8	20	75	10	60	79	5	9	5	1.04
1899153--1899257	51	2.1	51	87	0	147	29	14	15	40	1.86
1899636--1899925	93	3.2	88	78	11	257	35	10	19	34	1.85
1899728--1899901	89	2.0	89	84	6	228	38	9	20	32	1.84
1899848--1900006	84	1.9	84	82	7	198	34	11	18	35	1.87
1900111--1900140	3	10.0	3	100	0	60	33	0	0	66	0.92
1901845--1901875	14	2.2	14	94	0	53	45	0	6	48	1.28
1904237--1904273	19	1.9	19	100	0	74	48	35	5	10	1.61
1906584--1906635	24	2.2	24	85	0	68	36	15	11	36	1.84
1914493--1914665	90	1.9	90	91	1	285	38	8	7	45	1.63
1916107--1916140	11	2.9	11	91	8	50	88	0	2	8	0.62
1916146--1916183	19	2.0	20	89	5	60	73	0	23	2	0.95
1920746--1920791	2	22.5	2	86	4	65	47	2	0	50	1.13
1920758--1920815	19	3.4	17	81	11	66	43	1	0	55	1.10
1920746--1920815	21	3.8	20	80	16	71	44	1	0	54	1.09
1920746--1920823	15	4.9	16	77	16	63	42	1	0	56	1.07
1922303--1923078	279	2.8	277	83	2	955	36	10	18	35	1.84
1922288--1923100	93	8.8	92	81	2	860	36	9	18	35	1.84
1928687--1928864	90	2.0	90	94	0	311	37	10	7	44	1.67
1928819--1928889	20	3.2	22	70	23	60	46	5	2	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1929747--1929771	13	1.9	13	100	0	50	32	0	16	52	1.44
1935860--1935930	19	3.7	19	100	0	142	30	30	16	21	1.95
1943317--1943360	21	2.1	21	86	0	61	9	40	15	34	1.79
1944486--1944523	20	1.9	20	94	0	67	31	34	15	18	1.92
1944545--1944633	46	2.0	46	88	2	135	29	25	17	26	1.98
1945758--1945812	20	2.8	20	81	10	76	32	16	25	25	1.96
1946205--1946328	55	2.2	56	80	8	137	32	13	22	31	1.93
1946517--1947385	81	10.8	81	86	2	1065	35	11	23	28	1.91
1946517--1947385	403	2.2	402	86	2	1201	35	11	23	28	1.91
1946517--1947385	322	2.7	321	87	3	1167	35	11	23	28	1.91

Tables:   1   2   3   4   5   6   7   8   9   10