genome.fa.s8495.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008495.1 Hibiscus syriacus cultivar Beakdansim tig00111338_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5120959

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  2  of  21  ( 2505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208082--208137	27	2.1	27	83	6	69	58	3	0	37	1.15
208325--208363	20	1.9	21	94	5	71	28	0	10	61	1.28
210256--210464	75	2.8	74	80	4	237	27	6	14	51	1.66
211865--211943	31	2.5	31	74	10	79	25	12	21	40	1.88
212291--212449	16	9.9	16	68	2	77	11	10	27	51	1.69
212356--212416	32	1.9	32	86	6	88	9	8	24	57	1.58
216217--216254	20	1.9	20	94	0	67	23	21	28	26	1.99
224685--224841	64	2.5	63	87	6	228	31	16	21	31	1.95
225495--225927	138	3.1	138	79	4	428	26	13	28	31	1.94
225580--225927	139	2.5	138	76	6	346	26	13	28	31	1.94
225986--226172	30	5.8	30	67	20	108	35	13	18	32	1.90
225953--226276	67	4.8	67	84	2	416	39	14	17	29	1.89
226083--226200	37	3.4	37	69	21	101	38	11	18	31	1.87
226150--226313	37	4.6	37	69	17	114	41	15	16	26	1.88
225972--226276	134	2.3	134	90	0	475	38	14	17	29	1.89
226254--226459	104	2.0	103	81	5	245	37	13	14	34	1.84
226293--226526	103	2.2	104	84	3	283	36	11	15	36	1.83
226546--226657	36	3.1	36	75	12	113	42	12	14	30	1.82
226545--226696	72	2.1	73	84	6	193	42	12	15	29	1.83
232074--232138	26	2.6	24	76	9	67	56	9	6	27	1.54
270017--270735	365	2.0	365	93	0	1233	31	20	12	35	1.90
287529--287625	47	2.1	47	84	7	126	31	13	20	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289869--290058	99	1.9	99	87	0	281	33	15	20	30	1.94
291931--292044	37	3.1	37	88	3	160	38	17	20	23	1.93
292092--292601	55	9.3	55	86	0	635	30	17	22	29	1.97
296274--296302	13	2.2	13	100	0	58	37	0	0	62	0.96
311983--312146	82	2.0	82	100	0	328	36	21	18	23	1.95
314056--314102	22	2.1	22	84	7	60	19	6	0	74	1.03
318267--318463	99	2.0	98	98	1	385	26	12	18	42	1.85
318574--318756	95	1.9	96	98	1	359	21	10	20	47	1.80
319873--320055	95	1.9	94	91	1	294	22	22	21	32	1.98
319834--320466	212	3.0	204	82	7	740	22	17	24	35	1.95
319968--320466	106	4.7	106	89	0	732	22	17	24	35	1.95
321567--321628	7	8.7	7	80	16	74	0	14	4	80	0.87
321569--321625	29	2.0	29	86	13	82	0	14	5	80	0.87
331169--331481	158	2.0	155	98	1	599	31	23	18	26	1.97
331986--332052	11	5.5	11	72	27	55	77	0	5	16	0.95
331985--332052	24	2.7	26	80	17	88	77	0	5	16	0.95
332256--332291	18	2.0	18	88	0	54	72	0	0	27	0.85
334161--334259	31	3.3	31	65	18	73	38	5	23	33	1.77
334132--334314	60	3.0	60	78	13	200	39	3	21	34	1.72
343071--343121	25	2.0	25	100	0	102	41	15	15	27	1.88
346291--346375	27	3.1	26	79	18	77	67	0	3	29	1.08
346335--346419	26	3.4	25	75	16	77	68	0	7	24	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346326--346421	26	3.6	26	69	19	72	67	0	7	25	1.16
346703--346780	33	2.4	33	91	4	122	30	15	17	35	1.91
346835--346869	9	3.9	9	88	0	52	82	0	0	17	0.66
347324--347386	32	2.0	32	87	0	90	30	9	15	44	1.79
347392--347443	15	3.3	15	70	19	52	44	17	15	23	1.86
347481--347553	37	2.0	37	94	0	128	35	13	20	30	1.91
348766--348859	32	2.9	32	85	3	118	37	19	12	30	1.89
349918--349959	13	3.2	13	86	6	66	2	14	2	80	0.90
351852--351886	5	6.8	5	93	6	61	82	0	0	17	0.66
353366--353441	33	2.3	31	85	12	107	28	13	19	38	1.90
353382--353447	33	2.0	33	96	0	123	27	10	21	40	1.86
353527--353567	5	8.4	5	91	8	59	63	0	0	36	0.95
353641--353682	20	2.0	21	86	9	59	38	0	30	30	1.58
354723--354823	48	2.1	48	88	1	148	24	12	26	35	1.92
354741--354898	49	3.4	48	80	7	155	21	11	31	36	1.89
359150--359217	32	2.1	32	91	0	109	27	25	4	42	1.74
364733--364772	20	2.1	20	86	9	57	67	5	0	27	1.11
365904--366010	54	2.0	54	90	0	169	34	14	12	38	1.84
366312--366721	208	2.0	208	99	0	802	49	12	9	28	1.71
369541--369622	24	3.3	25	69	17	73	52	6	2	39	1.39
369640--369705	7	8.7	7	72	21	53	66	1	3	28	1.15
373883--373923	20	2.0	20	95	0	73	2	14	21	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373863--373902	14	2.9	14	81	3	55	5	10	25	60	1.49
373886--373925	10	4.0	10	87	12	55	5	12	22	60	1.52
374768--374859	31	3.0	31	69	17	77	40	18	6	34	1.77
375421--375496	33	2.3	33	86	2	100	34	7	10	47	1.67
375409--375516	31	3.5	31	78	10	87	38	9	10	41	1.71
376147--376201	21	2.6	21	97	0	101	45	7	12	34	1.70
376193--376239	21	2.2	21	85	7	60	36	17	19	27	1.93
378843--379079	113	2.1	113	99	0	465	35	6	17	39	1.76
386188--386225	3	13.0	3	83	5	51	36	2	0	60	1.11
387740--387767	11	2.5	11	100	0	56	17	10	25	46	1.80
388209--388575	130	2.8	130	78	4	384	32	11	14	41	1.81
399173--399280	25	4.4	24	75	17	98	77	0	17	4	0.93
399169--399297	19	6.9	17	70	21	80	77	0	17	4	0.93
399170--399308	12	11.0	12	72	20	88	76	0	17	5	1.00
400519--401092	133	4.3	133	81	3	652	32	20	15	31	1.94
400519--401125	267	2.3	267	84	2	765	32	20	15	31	1.94
403438--403779	130	2.6	129	82	5	411	33	10	16	39	1.83
414118--414231	19	6.0	18	71	14	70	75	2	16	5	1.10
414128--414232	41	2.8	37	73	17	99	74	2	18	4	1.12
415437--415948	134	3.8	134	83	2	555	33	22	14	29	1.93
424819--424924	54	2.0	52	90	7	169	36	3	18	40	1.69
425126--425727	302	2.0	298	85	3	823	39	15	11	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432261--432310	21	2.4	21	79	0	55	24	24	18	34	1.96
432303--432350	21	2.3	21	92	0	78	27	14	8	50	1.71
433738--433791	18	3.2	18	71	12	51	64	0	5	29	1.16
433783--434083	147	2.0	150	96	3	554	50	9	10	28	1.69
435746--435790	24	1.9	23	86	4	63	42	20	6	31	1.77
436447--436481	17	2.0	18	94	5	63	14	22	45	17	1.84
441951--441995	24	1.9	23	86	4	63	42	20	6	31	1.77
443370--443680	157	2.0	157	99	0	613	37	19	8	34	1.82
447179--447223	16	2.7	17	89	6	58	28	13	6	51	1.66
447192--447223	16	2.0	16	100	0	64	31	12	6	50	1.65
448139--448181	23	1.9	23	85	4	61	37	9	13	39	1.78
452761--452827	33	2.0	33	88	0	98	28	17	25	28	1.98
452701--452846	20	7.6	20	72	14	101	30	19	20	30	1.97
458852--458942	38	2.4	38	85	5	121	29	24	28	17	1.97
470158--470355	85	2.4	83	82	6	229	33	15	18	31	1.93
470327--470370	13	3.4	13	83	0	52	38	15	18	27	1.91
470334--470378	13	3.5	13	87	0	63	33	15	20	31	1.93
471638--471733	15	6.3	15	71	23	67	11	15	0	72	1.11
471669--471734	18	4.3	15	77	22	57	10	18	0	71	1.14
487012--487055	3	14.7	3	86	9	63	31	0	0	68	0.90
487015--487055	16	2.8	14	86	13	64	31	0	0	68	0.90
491610--491656	24	2.0	24	83	8	60	61	2	19	17	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497197--497301	42	2.5	41	80	7	115	27	21	20	30	1.98
497458--497554	42	2.3	42	78	1	97	22	21	21	34	1.97
497199--498026	259	3.2	255	86	3	1119	32	16	16	35	1.91
498156--498222	3	21.7	3	84	6	53	23	0	8	67	1.19
498186--498236	16	3.1	16	82	5	57	33	0	1	64	1.05
499123--499177	3	18.7	3	74	10	51	29	1	3	65	1.20
500123--500320	107	1.9	107	83	2	263	21	16	18	43	1.87
504942--504986	20	2.3	20	88	3	65	20	17	6	55	1.64
512020--512074	5	9.5	6	77	18	55	80	1	16	1	0.90
512017--512074	23	2.5	23	88	0	89	79	1	17	1	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21